reconnect moved files to git repo
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Case,diagnosis,rate,volumne,constrict,const,log_rate,log_volumne
|
||||
1,constrict,0.825,3.7,1,1.0,-0.19237189264745613,1.308332819650179
|
||||
2,constrict,1.09,3.5,1,1.0,0.08617769624105241,1.252762968495368
|
||||
3,constrict,2.5,1.25,1,1.0,0.9162907318741551,0.22314355131420976
|
||||
4,constrict,1.5,0.75,1,1.0,0.4054651081081644,-0.2876820724517809
|
||||
5,constrict,3.2,0.8,1,1.0,1.1631508098056809,-0.2231435513142097
|
||||
6,constrict,3.5,0.7,1,1.0,1.252762968495368,-0.35667494393873245
|
||||
7,no_constrict,0.75,0.6,0,1.0,-0.2876820724517809,-0.5108256237659907
|
||||
8,no_constrict,1.7,1.1,0,1.0,0.5306282510621704,0.09531017980432493
|
||||
9,no_constrict,0.75,0.9,0,1.0,-0.2876820724517809,-0.10536051565782628
|
||||
10,no_constrict,0.45,0.9,0,1.0,-0.7985076962177716,-0.10536051565782628
|
||||
11,no_constrict,0.57,0.8,0,1.0,-0.5621189181535413,-0.2231435513142097
|
||||
12,no_constrict,2.75,0.55,0,1.0,1.0116009116784799,-0.5978370007556204
|
||||
13,no_constrict,3.0,0.6,0,1.0,1.0986122886681098,-0.5108256237659907
|
||||
14,constrict,2.33,1.4,1,1.0,0.8458682675776092,0.3364722366212129
|
||||
15,constrict,3.75,0.75,1,1.0,1.3217558399823195,-0.2876820724517809
|
||||
16,constrict,1.64,2.3,1,1.0,0.494696241836107,0.8329091229351039
|
||||
17,constrict,1.6,3.2,1,1.0,0.47000362924573563,1.1631508098056809
|
||||
18,constrict,1.415,0.85,1,1.0,0.34712953109520095,-0.16251892949777494
|
||||
19,no_constrict,1.06,1.7,0,1.0,0.058268908123975824,0.5306282510621704
|
||||
20,constrict,1.8,1.8,1,1.0,0.5877866649021191,0.5877866649021191
|
||||
21,no_constrict,2.0,0.4,0,1.0,0.6931471805599453,-0.916290731874155
|
||||
22,no_constrict,1.36,0.95,0,1.0,0.3074846997479607,-0.05129329438755058
|
||||
23,no_constrict,1.35,1.35,0,1.0,0.30010459245033816,0.30010459245033816
|
||||
24,no_constrict,1.36,1.5,0,1.0,0.3074846997479607,0.4054651081081644
|
||||
25,constrict,1.78,1.6,1,1.0,0.5766133643039938,0.47000362924573563
|
||||
26,no_constrict,1.5,0.6,0,1.0,0.4054651081081644,-0.5108256237659907
|
||||
27,constrict,1.5,1.8,1,1.0,0.4054651081081644,0.5877866649021191
|
||||
28,no_constrict,1.9,0.95,0,1.0,0.6418538861723947,-0.05129329438755058
|
||||
29,constrict,0.95,1.9,1,1.0,-0.05129329438755058,0.6418538861723947
|
||||
30,no_constrict,0.4,1.6,0,1.0,-0.916290731874155,0.47000362924573563
|
||||
31,constrict,0.75,2.7,1,1.0,-0.2876820724517809,0.9932517730102834
|
||||
32,no_constrict,0.03,2.35,0,1.0,-3.506557897319982,0.8544153281560676
|
||||
33,no_constrict,1.83,1.1,0,1.0,0.6043159668533296,0.09531017980432493
|
||||
34,constrict,2.2,1.1,1,1.0,0.7884573603642703,0.09531017980432493
|
||||
35,constrict,2.0,1.2,1,1.0,0.6931471805599453,0.1823215567939546
|
||||
36,constrict,3.33,0.8,1,1.0,1.2029723039923526,-0.2231435513142097
|
||||
37,no_constrict,1.9,0.95,0,1.0,0.6418538861723947,-0.05129329438755058
|
||||
38,no_constrict,1.9,0.75,0,1.0,0.6418538861723947,-0.2876820724517809
|
||||
39,constrict,1.625,1.3,1,1.0,0.4855078157817008,0.26236426446749106
|
||||
|
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@ -0,0 +1,4 @@
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"homog_stat","homog_df","homog_binom_p","homog_cont_p","lbl_stat","lbl_expval","lbl_var","lbl_chi2","lbl_pvalue","lbl2_stat","lbl2_expval","lbl2_var","lbl2_chi2","lbl2_pvalue","bowker_stat","bowker_df","bowker_pvalue"
|
||||
0.470588235294118,1,0.60759136127308,0.606905427217951,215,210.136363636364,5.44848959817612,4.34156260215759,0.0371927738063454,369,354.409090909091,49.0364063835851,4.34156260215755,0.0371927738063464,0.470588235294118,1,0.492716677227088
|
||||
271.922246968262,3,0,0,1760,1637.12,318.387012391739,47.4249696511547,5.71498404156046e-12,6006,5384.96,8083.23776042639,47.7148752803301,4.9293902293357e-12,297.610989010989,6,2.65851858368065e-61
|
||||
13.7647058823529,2,0,0,661,608.890625,45.1014721487451,60.2061714068945,8.54871728961371e-15,1761,1544.046875,804.735991710752,58.4895654377337,2.04281036531029e-14,13.7692307692308,3,0.00323670650323545
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||||
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@ -0,0 +1,61 @@
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Days Duration Weight ID
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||||
0.0 1 1 1
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2.0 1 1 2
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1.0 1 1 3
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3.0 1 1 4
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0.0 1 1 5
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2.0 1 1 6
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0.0 1 1 7
|
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5.0 1 1 8
|
||||
6.0 1 1 9
|
||||
8.0 1 1 10
|
||||
2.0 1 2 1
|
||||
4.0 1 2 2
|
||||
7.0 1 2 3
|
||||
12.0 1 2 4
|
||||
15.0 1 2 5
|
||||
4.0 1 2 6
|
||||
3.0 1 2 7
|
||||
1.0 1 2 8
|
||||
5.0 1 2 9
|
||||
20.0 1 2 10
|
||||
15.0 1 3 1
|
||||
10.0 1 3 2
|
||||
8.0 1 3 3
|
||||
5.0 1 3 4
|
||||
25.0 1 3 5
|
||||
16.0 1 3 6
|
||||
7.0 1 3 7
|
||||
30.0 1 3 8
|
||||
3.0 1 3 9
|
||||
27.0 1 3 10
|
||||
0.0 2 1 1
|
||||
1.0 2 1 2
|
||||
1.0 2 1 3
|
||||
0.0 2 1 4
|
||||
4.0 2 1 5
|
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2.0 2 1 6
|
||||
7.0 2 1 7
|
||||
4.0 2 1 8
|
||||
0.0 2 1 9
|
||||
3.0 2 1 10
|
||||
5.0 2 2 1
|
||||
3.0 2 2 2
|
||||
2.0 2 2 3
|
||||
0.0 2 2 4
|
||||
1.0 2 2 5
|
||||
1.0 2 2 6
|
||||
3.0 2 2 7
|
||||
6.0 2 2 8
|
||||
7.0 2 2 9
|
||||
9.0 2 2 10
|
||||
10.0 2 3 1
|
||||
8.0 2 3 2
|
||||
12.0 2 3 3
|
||||
3.0 2 3 4
|
||||
7.0 2 3 5
|
||||
15.0 2 3 6
|
||||
4.0 2 3 7
|
||||
9.0 2 3 8
|
||||
6.0 2 3 9
|
||||
1.0 2 3 10
|
||||
@ -0,0 +1,266 @@
|
||||
"","cond","anx","age","educ","gender","income","emo","p_harm","tone","eth","treat","english","immigr","anti_info","cong_mesg"
|
||||
"1","3","a little anxious",45,"high school","male",13,7,6,0,1,0,"Oppose",4,0,1
|
||||
"2","4","somewhat anxious",73,"bachelor's degree or higher","male",16,6,3,0,0,0,"Favor",3,0,0
|
||||
"3","2","a little anxious",53,"some college","female",3,8,7,1,0,0,"Strongly Oppose",3,0,0
|
||||
"4","1","not anxious at all",45,"high school","male",14,9,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"5","3","somewhat anxious",55,"some college","female",12,5,5,0,1,0,"Strongly Oppose",2,0,0
|
||||
"6","1","a little anxious",85,"high school","female",3,5,6,1,1,1,"Strongly Oppose",4,0,0
|
||||
"7","1","a little anxious",58,"high school","female",10,10,8,1,1,1,"Oppose",4,0,0
|
||||
"8","2","a little anxious",53,"some college","male",9,8,7,1,0,0,"Favor",4,1,1
|
||||
"9","1","a little anxious",52,"some college","female",14,8,5,1,1,1,"Strongly Oppose",3,0,0
|
||||
"10","4","very anxious",42,"some college","male",15,3,2,0,0,0,"Oppose",2,0,0
|
||||
"11","4","a little anxious",38,"bachelor's degree or higher","female",9,11,8,0,0,0,"Strongly Oppose",4,1,1
|
||||
"12","4","very anxious",38,"high school","male",6,9,8,0,0,0,"Strongly Oppose",4,1,1
|
||||
"13","4","a little anxious",26,"bachelor's degree or higher","female",10,8,6,0,0,0,"Oppose",3,0,1
|
||||
"14","1","not anxious at all",52,"some college","male",11,10,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"15","1","very anxious",48,"some college","male",19,3,3,1,1,1,"Oppose",2,0,0
|
||||
"16","2","not anxious at all",62,"high school","female",10,12,8,1,0,0,"Strongly Oppose",4,1,1
|
||||
"17","1","not anxious at all",41,"less than high school","female",7,9,8,1,1,1,"Oppose",4,0,0
|
||||
"18","3","somewhat anxious",54,"high school","male",11,6,6,0,1,0,"Strongly Oppose",4,0,0
|
||||
"19","1","a little anxious",69,"high school","female",9,8,7,1,1,1,"Strongly Oppose",4,0,0
|
||||
"20","1","somewhat anxious",71,"less than high school","male",6,6,6,1,1,1,"Strongly Oppose",1,0,0
|
||||
"21","3","somewhat anxious",62,"some college","male",14,4,5,0,1,0,"Oppose",2,0,0
|
||||
"22","2","very anxious",41,"some college","male",13,3,6,1,0,0,"Strongly Oppose",3,0,0
|
||||
"23","3","a little anxious",60,"high school","female",11,7,7,0,1,0,"Strongly Oppose",4,0,1
|
||||
"24","4","somewhat anxious",62,"some college","male",17,6,8,0,0,0,"Oppose",4,0,1
|
||||
"25","4","somewhat anxious",31,"bachelor's degree or higher","male",13,7,5,0,0,0,"Strongly Oppose",4,0,0
|
||||
"26","3","somewhat anxious",50,"some college","female",13,4,2,0,1,0,"Strongly Oppose",2,0,0
|
||||
"27","3","a little anxious",48,"high school","male",7,9,5,0,1,0,"Strongly Oppose",4,0,1
|
||||
"28","2","somewhat anxious",29,"some college","male",10,6,4,1,0,0,"Strongly Favor",2,0,0
|
||||
"29","3","a little anxious",64,"high school","female",5,9,5,0,1,0,"Oppose",4,0,0
|
||||
"30","3","very anxious",65,"high school","female",12,4,6,0,1,0,"Strongly Oppose",4,0,1
|
||||
"31","4","not anxious at all",66,"less than high school","female",4,12,8,0,0,0,"Oppose",4,0,0
|
||||
"32","1","not anxious at all",68,"high school","female",9,11,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"33","4","somewhat anxious",43,"high school","female",15,6,6,0,0,0,"Favor",3,0,0
|
||||
"34","3","a little anxious",57,"bachelor's degree or higher","female",12,7,5,0,1,0,"Oppose",3,0,0
|
||||
"35","3","somewhat anxious",41,"high school","male",11,9,4,0,1,0,"Strongly Oppose",4,0,0
|
||||
"36","2","somewhat anxious",85,"bachelor's degree or higher","male",13,7,7,1,0,0,"Strongly Oppose",3,0,1
|
||||
"37","4","a little anxious",70,"bachelor's degree or higher","male",15,8,8,0,0,0,"Strongly Oppose",4,0,1
|
||||
"38","3","a little anxious",65,"bachelor's degree or higher","male",14,8,6,0,1,0,"Strongly Oppose",4,0,0
|
||||
"39","2","a little anxious",67,"less than high school","female",11,11,8,1,0,0,"Strongly Oppose",4,1,1
|
||||
"40","1","a little anxious",68,"some college","female",9,6,5,1,1,1,"Favor",2,0,0
|
||||
"41","2","somewhat anxious",64,"some college","male",13,5,5,1,0,0,"Strongly Oppose",2,0,0
|
||||
"42","1","a little anxious",37,"some college","male",13,10,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"43","3","not anxious at all",45,"high school","female",7,10,7,0,1,0,"Strongly Oppose",4,0,0
|
||||
"44","3","a little anxious",81,"less than high school","female",14,9,7,0,1,0,"Oppose",4,0,1
|
||||
"45","2","somewhat anxious",51,"high school","female",10,6,6,1,0,0,"Strongly Oppose",3,0,0
|
||||
"46","1","a little anxious",53,"some college","male",12,10,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"47","4","somewhat anxious",62,"high school","female",9,6,5,0,0,0,"Strongly Oppose",4,0,0
|
||||
"48","2","a little anxious",42,"less than high school","male",8,9,8,1,0,0,"Oppose",4,0,1
|
||||
"49","1","a little anxious",71,"some college","female",12,8,8,1,1,1,"Strongly Oppose",4,0,0
|
||||
"50","1","a little anxious",56,"high school","male",11,11,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"51","1","a little anxious",67,"less than high school","female",8,10,5,1,1,1,"Oppose",4,0,1
|
||||
"52","4","a little anxious",77,"some college","female",6,7,6,0,0,0,"Strongly Oppose",2,1,0
|
||||
"53","1","not anxious at all",24,"some college","female",15,11,7,1,1,1,"Strongly Oppose",4,1,1
|
||||
"54","4","a little anxious",42,"high school","male",3,7,5,0,0,0,"Oppose",2,0,0
|
||||
"55","3","very anxious",25,"bachelor's degree or higher","female",11,3,4,0,1,0,"Oppose",2,0,0
|
||||
"56","1","a little anxious",60,"high school","female",12,8,6,1,1,1,"Oppose",4,0,0
|
||||
"57","1","somewhat anxious",43,"some college","male",14,10,8,1,1,1,"Strongly Oppose",1,0,1
|
||||
"58","1","a little anxious",60,"some college","male",6,9,6,1,1,1,"Strongly Oppose",3,0,0
|
||||
"59","4","not anxious at all",31,"high school","male",11,11,7,0,0,0,"Strongly Oppose",4,1,0
|
||||
"60","2","somewhat anxious",47,"some college","female",13,7,6,1,0,0,"Favor",3,0,0
|
||||
"61","1","very anxious",32,"bachelor's degree or higher","female",10,3,2,1,1,1,"Favor",2,0,0
|
||||
"62","2","somewhat anxious",66,"some college","male",8,8,7,1,0,0,"Strongly Oppose",3,0,0
|
||||
"63","2","very anxious",44,"high school","female",15,6,8,1,0,0,"Strongly Oppose",4,0,0
|
||||
"64","2","somewhat anxious",46,"high school","male",17,6,4,1,0,0,"Strongly Oppose",3,0,0
|
||||
"65","4","very anxious",41,"high school","female",10,3,3,0,0,0,"Strongly Oppose",2,0,0
|
||||
"66","2","a little anxious",75,"high school","female",9,7,4,1,0,0,"Strongly Oppose",3,0,0
|
||||
"67","1","not anxious at all",53,"bachelor's degree or higher","male",10,12,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"68","3","very anxious",60,"bachelor's degree or higher","male",12,3,4,0,1,0,"Favor",2,0,0
|
||||
"69","3","very anxious",75,"high school","female",2,4,6,0,1,0,"Favor",2,0,0
|
||||
"70","2","not anxious at all",45,"high school","male",9,12,8,1,0,0,"Strongly Oppose",4,0,0
|
||||
"71","2","not anxious at all",69,"less than high school","female",5,12,8,1,0,0,"Strongly Oppose",4,0,1
|
||||
"72","4","somewhat anxious",67,"high school","female",15,6,4,0,0,0,"Strongly Oppose",3,0,0
|
||||
"73","4","somewhat anxious",20,"high school","male",9,5,5,0,0,0,"Oppose",2,0,0
|
||||
"74","1","somewhat anxious",43,"bachelor's degree or higher","male",16,6,4,1,1,1,"Strongly Oppose",2,0,0
|
||||
"75","4","a little anxious",32,"some college","male",10,9,8,0,0,0,"Strongly Oppose",4,0,0
|
||||
"76","3","somewhat anxious",39,"high school","male",12,5,4,0,1,0,"Favor",3,0,0
|
||||
"77","3","very anxious",53,"bachelor's degree or higher","female",13,4,3,0,1,0,"Favor",2,0,0
|
||||
"78","2","not anxious at all",57,"some college","female",2,12,8,1,0,0,"Strongly Oppose",4,1,0
|
||||
"79","4","a little anxious",62,"high school","female",7,8,7,0,0,0,"Strongly Oppose",3,1,1
|
||||
"80","2","a little anxious",69,"high school","female",7,9,8,1,0,0,"Strongly Oppose",4,0,0
|
||||
"81","2","somewhat anxious",44,"high school","female",13,7,6,1,0,0,"Oppose",4,0,0
|
||||
"82","1","not anxious at all",57,"high school","male",11,12,8,1,1,1,"Strongly Oppose",4,0,0
|
||||
"83","4","a little anxious",27,"some college","female",15,7,4,0,0,0,"Strongly Oppose",2,0,0
|
||||
"84","3","somewhat anxious",82,"bachelor's degree or higher","female",17,7,5,0,1,0,"Oppose",2,0,0
|
||||
"85","4","somewhat anxious",84,"high school","male",12,6,6,0,0,0,"Strongly Oppose",3,1,1
|
||||
"86","3","somewhat anxious",54,"some college","female",13,5,6,0,1,0,"Oppose",2,0,0
|
||||
"87","2","very anxious",36,"less than high school","male",11,4,6,1,0,0,"Oppose",4,0,0
|
||||
"88","1","not anxious at all",47,"some college","male",13,12,8,1,1,1,"Strongly Oppose",4,1,1
|
||||
"89","1","very anxious",28,"bachelor's degree or higher","female",12,3,6,1,1,1,"Strongly Oppose",4,0,0
|
||||
"90","2","very anxious",42,"high school","female",14,4,8,1,0,0,"Strongly Oppose",4,0,1
|
||||
"91","3","very anxious",60,"high school","male",6,7,8,0,1,0,"Strongly Oppose",4,0,0
|
||||
"92","1","very anxious",55,"bachelor's degree or higher","male",15,3,4,1,1,1,"Strongly Oppose",3,0,0
|
||||
"93","2","a little anxious",55,"high school","female",6,9,7,1,0,0,"Strongly Oppose",4,0,0
|
||||
"94","4","not anxious at all",61,"some college","male",12,12,8,0,0,0,"Strongly Oppose",4,1,1
|
||||
"95","3","somewhat anxious",84,"high school","female",11,5,2,0,1,0,"Favor",2,0,0
|
||||
"96","4","not anxious at all",45,"high school","female",3,10,8,0,0,0,"Oppose",1,0,1
|
||||
"97","1","a little anxious",67,"some college","male",7,8,8,1,1,1,"Oppose",3,0,0
|
||||
"98","2","not anxious at all",24,"some college","male",12,11,8,1,0,0,"Strongly Oppose",4,0,0
|
||||
"99","2","not anxious at all",64,"less than high school","male",11,10,7,1,0,0,"Strongly Oppose",4,1,1
|
||||
"100","1","a little anxious",72,"high school","female",7,10,3,1,1,1,"Strongly Oppose",4,0,0
|
||||
"101","2","not anxious at all",40,"high school","female",4,12,8,1,0,0,"Strongly Favor",1,0,1
|
||||
"102","4","not anxious at all",35,"bachelor's degree or higher","female",11,9,8,0,0,0,"Strongly Oppose",4,1,1
|
||||
"103","1","not anxious at all",69,"high school","female",8,12,8,1,1,1,"Oppose",4,0,1
|
||||
"104","1","a little anxious",30,"less than high school","female",6,11,7,1,1,1,"Oppose",4,0,0
|
||||
"105","2","a little anxious",45,"high school","female",7,8,8,1,0,0,"Strongly Oppose",3,0,0
|
||||
"106","4","very anxious",35,"some college","male",9,3,4,0,0,0,"Oppose",2,0,0
|
||||
"107","4","not anxious at all",47,"high school","male",11,10,8,0,0,0,"Oppose",3,1,1
|
||||
"108","4","a little anxious",53,"some college","male",11,5,4,0,0,0,"Strongly Oppose",2,0,0
|
||||
"109","3","a little anxious",75,"high school","male",4,9,6,0,1,0,"Oppose",2,0,0
|
||||
"110","1","somewhat anxious",70,"high school","female",13,8,6,1,1,1,"Favor",3,0,0
|
||||
"111","1","somewhat anxious",56,"high school","female",8,7,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"112","3","a little anxious",70,"less than high school","female",7,8,8,0,1,0,"Strongly Oppose",3,0,0
|
||||
"113","4","somewhat anxious",35,"bachelor's degree or higher","male",11,4,3,0,0,0,"Strongly Oppose",2,0,0
|
||||
"114","1","not anxious at all",54,"bachelor's degree or higher","female",11,12,6,1,1,1,"Strongly Oppose",4,0,0
|
||||
"115","2","somewhat anxious",76,"bachelor's degree or higher","male",12,5,6,1,0,0,"Strongly Oppose",2,0,0
|
||||
"116","1","a little anxious",65,"high school","female",13,9,6,1,1,1,"Strongly Oppose",4,1,1
|
||||
"117","2","somewhat anxious",22,"high school","male",12,5,4,1,0,0,"Oppose",2,0,0
|
||||
"118","3","somewhat anxious",28,"high school","male",13,8,8,0,1,0,"Strongly Oppose",4,0,1
|
||||
"119","4","very anxious",26,"bachelor's degree or higher","male",11,3,5,0,0,0,"Favor",3,0,0
|
||||
"120","1","somewhat anxious",67,"high school","male",13,5,6,1,1,1,"Strongly Oppose",4,0,0
|
||||
"121","4","very anxious",58,"high school","male",13,5,4,0,0,0,"Strongly Oppose",3,0,1
|
||||
"122","3","somewhat anxious",34,"some college","female",16,6,3,0,1,0,"Strongly Oppose",3,0,0
|
||||
"123","2","very anxious",29,"bachelor's degree or higher","female",1,5,6,1,0,0,"Oppose",2,0,0
|
||||
"124","3","a little anxious",61,"less than high school","male",13,10,6,0,1,0,"Oppose",4,0,1
|
||||
"125","4","not anxious at all",58,"some college","female",6,11,8,0,0,0,"Strongly Oppose",4,0,0
|
||||
"126","1","very anxious",46,"some college","female",10,5,4,1,1,1,"Oppose",2,0,0
|
||||
"127","3","not anxious at all",73,"less than high school","female",6,8,6,0,1,0,"Strongly Oppose",4,0,1
|
||||
"128","4","very anxious",23,"bachelor's degree or higher","male",1,3,3,0,0,0,"Strongly Oppose",1,0,0
|
||||
"129","3","very anxious",19,"high school","male",15,4,6,0,1,0,"Strongly Oppose",3,0,0
|
||||
"130","2","somewhat anxious",35,"some college","male",8,4,4,1,0,0,"Strongly Oppose",2,0,0
|
||||
"131","2","very anxious",29,"bachelor's degree or higher","male",19,4,5,1,0,0,"Strongly Oppose",3,0,0
|
||||
"132","2","very anxious",53,"bachelor's degree or higher","male",8,3,3,1,0,0,"Strongly Oppose",3,0,0
|
||||
"133","3","a little anxious",72,"bachelor's degree or higher","male",12,7,6,0,1,0,"Oppose",3,0,1
|
||||
"134","3","somewhat anxious",36,"bachelor's degree or higher","male",14,5,4,0,1,0,"Favor",1,0,0
|
||||
"135","1","not anxious at all",26,"less than high school","male",5,11,8,1,1,1,"Strongly Oppose",3,0,0
|
||||
"136","2","a little anxious",46,"bachelor's degree or higher","female",13,7,8,1,0,0,"Strongly Oppose",4,0,1
|
||||
"137","3","a little anxious",31,"high school","male",6,9,8,0,1,0,"Strongly Oppose",4,0,0
|
||||
"138","2","a little anxious",70,"high school","female",1,8,7,1,0,0,"Strongly Oppose",4,0,0
|
||||
"139","4","a little anxious",65,"bachelor's degree or higher","male",13,7,6,0,0,0,"Strongly Oppose",3,0,1
|
||||
"140","4","very anxious",69,"less than high school","female",1,4,4,0,0,0,"Oppose",2,0,0
|
||||
"141","4","very anxious",72,"bachelor's degree or higher","male",11,4,4,0,0,0,"Oppose",2,0,0
|
||||
"142","1","not anxious at all",71,"less than high school","female",13,12,8,1,1,1,"Strongly Oppose",4,1,1
|
||||
"143","2","very anxious",62,"some college","male",12,4,6,1,0,0,"Oppose",3,0,0
|
||||
"144","3","a little anxious",37,"bachelor's degree or higher","male",13,7,5,0,1,0,"Oppose",3,0,0
|
||||
"145","2","very anxious",36,"high school","female",5,3,6,1,0,0,"Oppose",3,0,0
|
||||
"146","4","somewhat anxious",47,"some college","female",9,4,4,0,0,0,"Favor",3,0,0
|
||||
"147","3","somewhat anxious",47,"bachelor's degree or higher","male",16,5,4,0,1,0,"Oppose",3,0,0
|
||||
"148","1","very anxious",28,"bachelor's degree or higher","male",4,3,3,1,1,1,"Oppose",3,0,0
|
||||
"149","2","somewhat anxious",34,"bachelor's degree or higher","female",11,5,6,1,0,0,"Oppose",2,0,0
|
||||
"150","2","very anxious",69,"bachelor's degree or higher","male",10,3,4,1,0,0,"Favor",2,0,0
|
||||
"151","3","a little anxious",47,"high school","male",12,10,8,0,1,0,"Oppose",3,0,1
|
||||
"152","1","not anxious at all",73,"high school","male",11,11,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"153","3","very anxious",63,"high school","female",10,3,3,0,1,0,"Strongly Oppose",2,0,0
|
||||
"154","2","somewhat anxious",33,"less than high school","male",1,7,4,1,0,0,"Strongly Oppose",2,0,0
|
||||
"155","1","somewhat anxious",42,"high school","female",6,7,4,1,1,1,"Oppose",2,0,0
|
||||
"156","3","somewhat anxious",43,"high school","female",7,5,6,0,1,0,"Strongly Oppose",4,1,1
|
||||
"157","4","very anxious",50,"bachelor's degree or higher","female",16,3,4,0,0,0,"Oppose",2,0,0
|
||||
"158","2","somewhat anxious",56,"bachelor's degree or higher","male",10,6,7,1,0,0,"Strongly Oppose",3,0,1
|
||||
"159","3","somewhat anxious",28,"some college","female",11,6,6,0,1,0,"Strongly Oppose",2,0,0
|
||||
"160","1","somewhat anxious",44,"some college","female",13,8,8,1,1,1,"Oppose",4,0,0
|
||||
"161","3","somewhat anxious",38,"bachelor's degree or higher","female",9,5,6,0,1,0,"Oppose",1,0,0
|
||||
"162","1","not anxious at all",34,"bachelor's degree or higher","female",14,11,7,1,1,1,"Strongly Oppose",2,0,0
|
||||
"163","2","very anxious",56,"some college","male",16,3,3,1,0,0,"Strongly Oppose",2,0,0
|
||||
"164","3","somewhat anxious",47,"bachelor's degree or higher","male",11,4,6,0,1,0,"Oppose",2,0,0
|
||||
"165","4","somewhat anxious",42,"bachelor's degree or higher","male",7,7,6,0,0,0,"Strongly Oppose",4,0,1
|
||||
"166","3","somewhat anxious",53,"some college","female",16,4,5,0,1,0,"Strongly Oppose",2,0,0
|
||||
"167","3","very anxious",38,"bachelor's degree or higher","female",11,4,4,0,1,0,"Strongly Favor",1,0,0
|
||||
"168","2","somewhat anxious",50,"bachelor's degree or higher","female",11,6,4,1,0,0,"Favor",3,0,0
|
||||
"169","3","a little anxious",21,"high school","male",15,8,7,0,1,0,"Strongly Oppose",3,0,1
|
||||
"170","4","somewhat anxious",25,"some college","male",18,5,6,0,0,0,"Strongly Oppose",3,0,0
|
||||
"171","3","very anxious",58,"high school","female",16,5,8,0,1,0,"Oppose",4,0,1
|
||||
"172","4","somewhat anxious",39,"some college","male",10,5,7,0,0,0,"Strongly Oppose",3,1,0
|
||||
"173","4","not anxious at all",26,"some college","female",7,12,8,0,0,0,"Strongly Oppose",4,0,0
|
||||
"174","4","somewhat anxious",61,"some college","female",8,8,6,0,0,0,"Strongly Oppose",4,0,1
|
||||
"175","1","somewhat anxious",29,"some college","female",11,5,4,1,1,1,"Oppose",1,0,0
|
||||
"176","3","not anxious at all",39,"some college","female",12,12,7,0,1,0,"Strongly Oppose",4,0,1
|
||||
"177","2","somewhat anxious",40,"bachelor's degree or higher","male",11,7,6,1,0,0,"Strongly Oppose",4,0,1
|
||||
"178","1","somewhat anxious",30,"bachelor's degree or higher","female",11,4,4,1,1,1,"Strongly Favor",2,0,0
|
||||
"179","2","very anxious",64,"bachelor's degree or higher","female",10,3,5,1,0,0,"Oppose",1,0,0
|
||||
"180","2","a little anxious",50,"less than high school","male",5,10,7,1,0,0,"Strongly Oppose",3,0,1
|
||||
"181","2","somewhat anxious",33,"bachelor's degree or higher","female",12,9,8,1,0,0,"Strongly Oppose",4,0,0
|
||||
"182","3","somewhat anxious",35,"high school","male",9,6,6,0,1,0,"Oppose",4,0,1
|
||||
"183","1","somewhat anxious",26,"bachelor's degree or higher","female",16,6,5,1,1,1,"Oppose",3,0,0
|
||||
"184","1","not anxious at all",44,"some college","male",16,10,8,1,1,1,"Strongly Oppose",4,0,0
|
||||
"185","1","somewhat anxious",44,"some college","male",13,6,6,1,1,1,"Oppose",4,0,1
|
||||
"186","1","not anxious at all",25,"some college","male",11,12,8,1,1,1,"Strongly Oppose",4,1,1
|
||||
"187","3","very anxious",44,"bachelor's degree or higher","male",17,3,4,0,1,0,"Oppose",1,0,0
|
||||
"188","2","a little anxious",51,"bachelor's degree or higher","female",17,9,8,1,0,0,"Strongly Oppose",4,1,1
|
||||
"189","2","very anxious",62,"bachelor's degree or higher","female",14,5,6,1,0,0,"Strongly Oppose",3,0,0
|
||||
"190","4","very anxious",55,"bachelor's degree or higher","female",18,3,8,0,0,0,"Strongly Oppose",4,0,1
|
||||
"191","3","somewhat anxious",43,"bachelor's degree or higher","male",13,5,6,0,1,0,"Strongly Oppose",3,0,1
|
||||
"192","4","very anxious",53,"bachelor's degree or higher","male",12,3,3,0,0,0,"Strongly Oppose",3,1,1
|
||||
"193","3","a little anxious",49,"some college","female",10,6,4,0,1,0,"Oppose",3,0,1
|
||||
"194","3","somewhat anxious",34,"some college","male",11,5,4,0,1,0,"Favor",2,0,0
|
||||
"195","4","not anxious at all",36,"high school","male",11,9,7,0,0,0,"Strongly Oppose",4,0,0
|
||||
"196","2","very anxious",31,"bachelor's degree or higher","male",11,3,3,1,0,0,"Strongly Oppose",3,0,1
|
||||
"197","4","somewhat anxious",57,"bachelor's degree or higher","female",15,5,5,0,0,0,"Strongly Oppose",2,0,0
|
||||
"198","2","somewhat anxious",18,"less than high school","female",16,6,6,1,0,0,"Oppose",1,0,0
|
||||
"199","3","somewhat anxious",37,"bachelor's degree or higher","female",12,5,6,0,1,0,"Strongly Oppose",3,0,0
|
||||
"200","3","very anxious",63,"bachelor's degree or higher","male",16,3,4,0,1,0,"Strongly Oppose",1,0,0
|
||||
"201","2","a little anxious",48,"bachelor's degree or higher","female",16,8,8,1,0,0,"Oppose",3,0,0
|
||||
"202","4","not anxious at all",32,"high school","male",13,12,8,0,0,0,"Strongly Oppose",4,0,1
|
||||
"203","2","a little anxious",28,"some college","female",9,7,5,1,0,0,"Oppose",2,0,0
|
||||
"204","4","somewhat anxious",45,"high school","female",13,6,5,0,0,0,"Favor",3,0,0
|
||||
"205","1","a little anxious",59,"some college","male",13,7,8,1,1,1,"Oppose",4,1,1
|
||||
"206","4","not anxious at all",82,"high school","female",10,11,8,0,0,0,"Strongly Oppose",3,1,0
|
||||
"207","2","very anxious",62,"bachelor's degree or higher","female",2,4,4,1,0,0,"Favor",2,0,0
|
||||
"208","1","very anxious",35,"bachelor's degree or higher","female",19,4,5,1,1,1,"Oppose",3,0,0
|
||||
"209","4","very anxious",47,"some college","female",15,4,5,0,0,0,"Oppose",1,0,1
|
||||
"210","3","not anxious at all",65,"some college","male",15,11,8,0,1,0,"Strongly Oppose",2,0,0
|
||||
"211","1","a little anxious",62,"high school","male",13,8,8,1,1,1,"Strongly Oppose",4,0,0
|
||||
"212","4","a little anxious",59,"bachelor's degree or higher","female",18,7,7,0,0,0,"Strongly Oppose",4,0,1
|
||||
"213","4","somewhat anxious",51,"bachelor's degree or higher","female",9,6,6,0,0,0,"Oppose",2,0,0
|
||||
"214","1","somewhat anxious",33,"high school","female",12,8,6,1,1,1,"Strongly Oppose",4,0,0
|
||||
"215","1","a little anxious",27,"some college","female",8,9,6,1,1,1,"Oppose",3,0,0
|
||||
"216","2","somewhat anxious",54,"bachelor's degree or higher","female",10,5,3,1,0,0,"Strongly Oppose",2,1,0
|
||||
"217","3","very anxious",58,"bachelor's degree or higher","male",5,3,2,0,1,0,"Favor",1,0,0
|
||||
"218","2","very anxious",20,"some college","male",3,3,3,1,0,0,"Strongly Favor",2,0,0
|
||||
"219","3","very anxious",47,"bachelor's degree or higher","male",5,3,3,0,1,0,"Oppose",3,0,0
|
||||
"220","2","a little anxious",29,"high school","male",12,10,7,1,0,0,"Oppose",4,1,1
|
||||
"221","3","not anxious at all",54,"high school","female",4,12,8,0,1,0,"Strongly Oppose",4,0,0
|
||||
"222","1","a little anxious",24,"bachelor's degree or higher","female",7,7,6,1,1,1,"Oppose",3,0,0
|
||||
"223","2","not anxious at all",47,"high school","female",10,12,8,1,0,0,"Strongly Oppose",4,1,1
|
||||
"224","3","a little anxious",25,"some college","female",11,7,3,0,1,0,"Oppose",2,0,0
|
||||
"225","4","somewhat anxious",28,"high school","male",10,5,6,0,0,0,"Oppose",3,0,0
|
||||
"226","2","somewhat anxious",57,"bachelor's degree or higher","male",16,7,6,1,0,0,"Strongly Favor",3,0,1
|
||||
"227","4","a little anxious",26,"high school","male",8,10,6,0,0,0,"Strongly Oppose",4,0,0
|
||||
"228","1","a little anxious",43,"high school","male",7,7,7,1,1,1,"Strongly Favor",3,0,1
|
||||
"229","4","somewhat anxious",35,"high school","male",12,6,6,0,0,0,"Strongly Oppose",4,0,1
|
||||
"230","4","a little anxious",29,"bachelor's degree or higher","female",11,7,5,0,0,0,"Oppose",2,0,0
|
||||
"231","2","very anxious",26,"some college","female",14,5,4,1,0,0,"Oppose",3,0,0
|
||||
"232","3","not anxious at all",18,"high school","female",15,12,8,0,1,0,"Strongly Oppose",4,0,0
|
||||
"233","4","very anxious",60,"bachelor's degree or higher","female",12,3,2,0,0,0,"Oppose",1,0,0
|
||||
"234","4","very anxious",42,"bachelor's degree or higher","female",15,3,3,0,0,0,"Strongly Oppose",2,0,0
|
||||
"235","1","a little anxious",29,"high school","female",15,10,8,1,1,1,"Strongly Oppose",4,0,1
|
||||
"236","3","somewhat anxious",57,"bachelor's degree or higher","female",10,5,4,0,1,0,"Favor",1,0,0
|
||||
"237","2","not anxious at all",53,"high school","female",14,10,8,1,0,0,"Strongly Oppose",4,0,1
|
||||
"238","3","very anxious",27,"some college","male",6,3,6,0,1,0,"Strongly Oppose",3,0,0
|
||||
"239","1","a little anxious",25,"bachelor's degree or higher","male",8,9,7,1,1,1,"Strongly Oppose",4,0,1
|
||||
"240","3","somewhat anxious",37,"some college","female",7,7,4,0,1,0,"Strongly Oppose",2,0,0
|
||||
"241","1","a little anxious",25,"some college","female",12,7,7,1,1,1,"Oppose",3,0,1
|
||||
"242","1","very anxious",38,"bachelor's degree or higher","female",13,4,3,1,1,1,"Strongly Oppose",3,0,0
|
||||
"243","1","somewhat anxious",39,"bachelor's degree or higher","female",15,5,5,1,1,1,"Strongly Oppose",3,0,0
|
||||
"244","1","somewhat anxious",26,"some college","male",7,7,6,1,1,1,"Strongly Oppose",4,0,1
|
||||
"245","4","very anxious",45,"bachelor's degree or higher","female",18,5,3,0,0,0,"Strongly Oppose",3,0,0
|
||||
"246","2","somewhat anxious",27,"some college","male",13,5,7,1,0,0,"Favor",4,0,0
|
||||
"247","3","very anxious",46,"high school","male",12,3,5,0,1,0,"Oppose",2,0,0
|
||||
"248","1","somewhat anxious",62,"high school","male",3,5,2,1,1,1,"Strongly Oppose",3,0,0
|
||||
"249","3","somewhat anxious",44,"high school","female",12,6,5,0,1,0,"Oppose",2,0,0
|
||||
"250","3","somewhat anxious",65,"bachelor's degree or higher","male",9,6,8,0,1,0,"Strongly Oppose",3,0,0
|
||||
"251","2","not anxious at all",34,"bachelor's degree or higher","male",8,12,7,1,0,0,"Oppose",3,0,0
|
||||
"252","4","somewhat anxious",66,"high school","female",11,7,8,0,0,0,"Oppose",3,1,1
|
||||
"253","3","very anxious",44,"high school","female",14,3,4,0,1,0,"Favor",2,0,0
|
||||
"254","1","a little anxious",34,"high school","male",13,7,5,1,1,1,"Oppose",3,0,1
|
||||
"255","4","a little anxious",43,"some college","male",10,11,8,0,0,0,"Strongly Oppose",4,0,0
|
||||
"256","2","a little anxious",30,"high school","male",9,8,7,1,0,0,"Strongly Oppose",4,0,0
|
||||
"257","1","not anxious at all",27,"some college","female",17,12,7,1,1,1,"Strongly Oppose",4,0,1
|
||||
"258","1","a little anxious",20,"high school","female",17,8,4,1,1,1,"Oppose",2,0,1
|
||||
"259","2","a little anxious",56,"high school","female",10,10,8,1,0,0,"Strongly Oppose",3,0,0
|
||||
"260","2","not anxious at all",42,"high school","male",12,10,7,1,0,0,"Oppose",4,0,1
|
||||
"261","3","somewhat anxious",44,"bachelor's degree or higher","male",17,7,6,0,1,0,"Oppose",1,0,0
|
||||
"262","4","somewhat anxious",28,"bachelor's degree or higher","female",14,6,6,0,0,0,"Strongly Oppose",1,0,1
|
||||
"263","2","very anxious",38,"bachelor's degree or higher","female",14,3,6,1,0,0,"Favor",2,0,0
|
||||
"264","1","somewhat anxious",29,"bachelor's degree or higher","male",10,9,7,1,1,1,"Strongly Oppose",4,0,1
|
||||
"265","4","very anxious",52,"some college","female",1,3,2,0,0,0,"Oppose",2,0,0
|
||||
|
File diff suppressed because one or more lines are too long
@ -0,0 +1,203 @@
|
||||
"","dfb.1_","dfb.ggdp","dfb.lint","dffit","cov.r","cook.d","hat"
|
||||
"1",0.00441265074628045,-0.0276220080672388,0.00820003383763133,-0.0317691297817947,1.04133845994251,0.000338059505147097,0.0256401118204194
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|
||||
"11",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
|
||||
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|
||||
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|
||||
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|
||||
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|
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|
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"193",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
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"194",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
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||||
"195",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
|
||||
"196",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
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||||
"197",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
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"198",FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,TRUE
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"199",FALSE,FALSE,FALSE,FALSE,TRUE,FALSE,FALSE
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"200",FALSE,FALSE,FALSE,TRUE,FALSE,FALSE,TRUE
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"202",FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE
|
||||
|
@ -0,0 +1,150 @@
|
||||
"""
|
||||
Simulate critical values for finite sample distribution
|
||||
and estimate asymptotic expansion parameters for the lilliefors tests
|
||||
"""
|
||||
import datetime as dt
|
||||
import gzip
|
||||
import logging
|
||||
import pickle
|
||||
from collections import defaultdict
|
||||
|
||||
import numpy as np
|
||||
import pandas as pd
|
||||
from scipy import stats
|
||||
from yapf.yapflib.yapf_api import FormatCode
|
||||
|
||||
import statsmodels.api as sm
|
||||
|
||||
NUM_SIM = 10000000
|
||||
MAX_MEMORY = 2 ** 28
|
||||
SAMPLE_SIZES = [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
|
||||
20, 25, 30, 40, 50, 100, 200, 400, 800, 1600]
|
||||
MIN_SAMPLE_SIZE = {'normal': 4, 'exp': 3}
|
||||
MAX_SIZE = max(SAMPLE_SIZES)
|
||||
MAX_SIM_SIZE = MAX_MEMORY // (MAX_SIZE * 8)
|
||||
PERCENTILES = [1, 5, 10, 25, 50, 75, 90, 92.5, 95, 97.5, 99, 99.5, 99.7, 99.9]
|
||||
seed = 113682199084250344115761738871133961874
|
||||
seed = np.array([(seed >> (32 * i)) % 2 ** 32 for i in range(4)],
|
||||
dtype=np.uint32)
|
||||
|
||||
|
||||
def simulations(sim_type, save=False):
|
||||
rs = np.random.RandomState(seed)
|
||||
remaining = NUM_SIM
|
||||
results = defaultdict(list)
|
||||
start = dt.datetime.now()
|
||||
while remaining > 0:
|
||||
this_iter = min(remaining, MAX_SIM_SIZE)
|
||||
remaining -= this_iter
|
||||
if sim_type == 'normal':
|
||||
dist = rs.standard_normal
|
||||
else:
|
||||
dist = rs.standard_exponential
|
||||
rvs = dist((MAX_SIZE, this_iter))
|
||||
sample_sizes = [ss for ss in SAMPLE_SIZES if
|
||||
ss >= MIN_SAMPLE_SIZE[sim_type]]
|
||||
for ss in sample_sizes:
|
||||
sample = rvs[:ss]
|
||||
mu = sample.mean(0)
|
||||
if sim_type == 'normal':
|
||||
std = sample.std(0, ddof=1)
|
||||
z = (sample - mu) / std
|
||||
cdf_fn = stats.norm.cdf
|
||||
else:
|
||||
z = sample / mu
|
||||
cdf_fn = stats.expon.cdf
|
||||
z = np.sort(z, axis=0)
|
||||
nobs = ss
|
||||
cdf = cdf_fn(z)
|
||||
plus = np.arange(1.0, nobs + 1) / nobs
|
||||
d_plus = (plus[:, None] - cdf).max(0)
|
||||
minus = np.arange(0.0, nobs) / nobs
|
||||
d_minus = (cdf - minus[:, None]).max(0)
|
||||
d = np.max(np.abs(np.c_[d_plus, d_minus]), 1)
|
||||
results[ss].append(d)
|
||||
logging.log(
|
||||
logging.INFO,
|
||||
'Completed {}, remaining {}'.format(
|
||||
NUM_SIM - remaining, remaining
|
||||
)
|
||||
)
|
||||
elapsed = dt.datetime.now() - start
|
||||
rem = elapsed.total_seconds() / (NUM_SIM - remaining) * remaining
|
||||
logging.log(logging.INFO,
|
||||
f'({sim_type}) Time remaining {rem:0.1f}s')
|
||||
|
||||
for key in results:
|
||||
results[key] = np.concatenate(results[key])
|
||||
|
||||
if save:
|
||||
file_name = f'lilliefors-sim-{sim_type}-results.pkl.gz'
|
||||
with gzip.open(file_name, 'wb', 5) as pkl:
|
||||
pickle.dump(results, pkl)
|
||||
|
||||
crit_vals = {}
|
||||
for key in results:
|
||||
crit_vals[key] = np.percentile(results[key], PERCENTILES)
|
||||
|
||||
start = 20
|
||||
num = len([k for k in crit_vals if k >= start])
|
||||
all_x = np.zeros((num * len(PERCENTILES), len(PERCENTILES) + 2))
|
||||
all_y = np.zeros(num * len(PERCENTILES))
|
||||
loc = 0
|
||||
for i, perc in enumerate(PERCENTILES):
|
||||
y = pd.DataFrame(results).quantile(perc / 100.)
|
||||
y = y.loc[start:]
|
||||
all_y[loc:loc + len(y)] = np.log(y)
|
||||
x = y.index.values.astype(float)
|
||||
all_x[loc:loc + len(y), -2:] = np.c_[np.log(x), np.log(x) ** 2]
|
||||
all_x[loc:loc + len(y), i:(i + 1)] = 1
|
||||
loc += len(y)
|
||||
w = np.ones_like(all_y).reshape(len(PERCENTILES), -1)
|
||||
w[6:, -5:] = 3
|
||||
w = w.ravel()
|
||||
res = sm.WLS(all_y, all_x, weights=w).fit()
|
||||
params = []
|
||||
for i in range(len(PERCENTILES)):
|
||||
params.append(np.r_[res.params[i], res.params[-2:]])
|
||||
params = np.array(params)
|
||||
|
||||
df = pd.DataFrame(params).T
|
||||
df.columns = PERCENTILES
|
||||
asymp_crit_vals = {}
|
||||
for col in df:
|
||||
asymp_crit_vals[col] = df[col].values
|
||||
|
||||
code = f'{sim_type}_crit_vals = '
|
||||
code += str(crit_vals).strip() + '\n\n'
|
||||
code += '\n# Coefficients are model '
|
||||
code += 'log(cv) = b[0] + b[1] log(n) + b[2] log(n)**2\n'
|
||||
code += f'{sim_type}_asymp_crit_vals = '
|
||||
code += str(asymp_crit_vals) + '\n\n'
|
||||
return code
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
logging.getLogger().setLevel(logging.INFO)
|
||||
header = '"""\nThis file is automatically generated by ' \
|
||||
'littlefors_critical_values.py.\nDo not directly modify' \
|
||||
'this file.\n\nValue based on 10,000,000 simulations."""\n\n'
|
||||
header += 'from numpy import array\n\n'
|
||||
header += 'PERCENTILES = ' + str(PERCENTILES).strip() + '\n\n'
|
||||
header += 'SAMPLE_SIZES = ' + str(SAMPLE_SIZES).strip() + '\n\n'
|
||||
normal = simulations('normal', True)
|
||||
exp = simulations('exp', True)
|
||||
footer = """
|
||||
# Critical Value
|
||||
critical_values = {'normal': normal_crit_vals,
|
||||
'exp': exp_crit_vals}
|
||||
asymp_critical_values = {'normal': normal_asymp_crit_vals,
|
||||
'exp': exp_asymp_crit_vals}
|
||||
|
||||
"""
|
||||
cv_filename = '../../_lilliefors_critical_values.py'
|
||||
with open(cv_filename, 'w', newline='\n', encoding="utf-8") as cv:
|
||||
cv.write(FormatCode(header)[0])
|
||||
cv.write(FormatCode(normal)[0])
|
||||
cv.write('\n\n')
|
||||
cv.write(FormatCode(exp)[0])
|
||||
cv.write('\n\n')
|
||||
cv.write(FormatCode(footer)[0])
|
||||
@ -0,0 +1,40 @@
|
||||
Case,LogRate,LogVolumne,resid_pearson,resid_deviance,hat_matrix_diagonal,dfb_intercept,dfb_lograte,dfb_logvolumne,Cooks C,Cooks Cbar,d_deviance,d_pearson_chi2
|
||||
1,-0.1924,1.3083,0.2205,0.3082,0.0927,-0.0165,0.0193,0.0556,0.00548,0.00497,0.1,0.0536
|
||||
2,0.0862,1.2528,0.1349,0.1899,0.0429,-0.0134,0.0151,0.0261,0.000853,0.000816,0.0369,0.019
|
||||
3,0.9163,0.2231,0.2923,0.4049,0.0612,-0.0492,0.066,0.0589,0.00593,0.00557,0.1695,0.091
|
||||
4,0.4055,-0.2877,3.5181,2.2775,0.0867,1.0734,-0.9302,-1.018,1.2873,1.1756,6.3626,13.5523
|
||||
5,1.1632,-0.2231,0.5287,0.7021,0.1158,-0.0832,0.1411,0.0583,0.0414,0.0366,0.5296,0.3161
|
||||
6,1.2528,-0.3567,0.609,0.7943,0.1524,-0.0922,0.171,0.0381,0.0787,0.0667,0.6976,0.4376
|
||||
7,-0.2877,-0.5108,-0.0328,-0.0464,0.00761,-0.0028,0.00274,0.00265,8.321e-06,8.258e-06,0.00216,0.00109
|
||||
8,0.5306,0.0953,-1.0196,-1.1939,0.0559,-0.1444,0.0613,0.057,0.0652,0.0616,1.487,1.1011
|
||||
9,-0.2877,-0.1054,-0.0938,-0.1323,0.0342,-0.0178,0.0173,0.0153,0.000322,0.000311,0.0178,0.00911
|
||||
10,-0.7985,-0.1054,-0.0293,-0.0414,0.00721,-0.00245,0.00246,0.00211,6.256e-06,6.211e-06,0.00172,0.000862
|
||||
11,-0.5621,-0.2231,-0.037,-0.0523,0.00969,-0.00361,0.00358,0.00319,1.4e-05,1.3e-05,0.00274,0.00138
|
||||
12,1.0116,-0.5978,-0.5073,-0.6768,0.1481,-0.1173,0.0647,0.1651,0.0525,0.0447,0.5028,0.3021
|
||||
13,1.0986,-0.5108,-0.7751,-0.97,0.1628,-0.0931,-0.00946,0.1775,0.1395,0.1168,1.0577,0.7175
|
||||
14,0.8459,0.3365,0.2559,0.3562,0.0551,-0.0414,0.0538,0.0527,0.00404,0.00382,0.1307,0.0693
|
||||
15,1.3218,-0.2877,0.4352,0.589,0.1336,-0.094,0.1408,0.0643,0.0337,0.0292,0.3761,0.2186
|
||||
16,0.4947,0.8329,0.1576,0.2215,0.0402,-0.0198,0.0234,0.0307,0.00108,0.00104,0.0501,0.0259
|
||||
17,0.47,1.1632,0.0709,0.1001,0.0172,-0.0063,0.00701,0.00914,8.9e-05,8.8e-05,0.0101,0.00511
|
||||
18,0.3471,-0.1625,2.9062,2.1192,0.0954,0.9595,-0.8279,-0.8477,0.9845,0.8906,5.3817,9.3363
|
||||
19,0.0583,0.5306,-1.0718,-1.2368,0.1315,-0.2591,0.2024,-0.00488,0.2003,0.174,1.7037,1.3227
|
||||
20,0.5878,0.5878,0.2405,0.3353,0.0525,-0.0331,0.0421,0.0518,0.00338,0.0032,0.1156,0.061
|
||||
21,0.6931,-0.9163,-0.1076,-0.1517,0.0373,-0.018,0.0158,0.0208,0.000465,0.000448,0.0235,0.012
|
||||
22,0.3075,-0.0513,-0.4193,-0.5691,0.1015,-0.1449,0.1237,0.1179,0.0221,0.0199,0.3437,0.1956
|
||||
23,0.3001,0.3001,-1.0242,-1.1978,0.0761,-0.1961,0.1275,0.0357,0.0935,0.0864,1.5212,1.1355
|
||||
24,0.3075,0.4055,-1.3684,-1.4527,0.0717,-0.1281,0.041,-0.1004,0.1558,0.1447,2.255,2.0171
|
||||
25,0.5766,0.47,0.3347,0.4608,0.0587,-0.0403,0.057,0.0708,0.00741,0.00698,0.2193,0.119
|
||||
26,0.4055,-0.5108,-0.1595,-0.2241,0.0548,-0.0366,0.0329,0.0373,0.00156,0.00147,0.0517,0.0269
|
||||
27,0.4055,0.5878,0.3645,0.4995,0.0661,-0.0327,0.0496,0.0788,0.0101,0.00941,0.2589,0.1423
|
||||
28,0.6419,-0.0513,-0.8989,-1.0883,0.0647,-0.1423,0.0617,0.1025,0.0597,0.0559,1.2404,0.8639
|
||||
29,-0.0513,0.6419,0.8981,1.0876,0.1682,0.2367,-0.195,0.0286,0.1961,0.1631,1.346,0.9697
|
||||
30,-0.9163,0.47,-0.0992,-0.14,0.0507,-0.0224,0.0227,0.0159,0.000554,0.000526,0.0201,0.0104
|
||||
31,-0.2877,0.9933,0.6198,0.8064,0.2459,0.1165,-0.0996,0.1322,0.1661,0.1253,0.7755,0.5095
|
||||
32,-3.5066,0.8544,-0.00073,-0.00103,2.2e-05,-3.22e-06,3.405e-06,2.48e-06,1.18e-11,1.18e-11,1.065e-06,5.324e-07
|
||||
33,0.6043,0.0953,-1.2062,-1.3402,0.051,-0.0882,-0.0137,-0.00216,0.0824,0.0782,1.8744,1.5331
|
||||
34,0.7885,0.0953,0.5447,0.7209,0.0601,-0.0425,0.0877,0.0671,0.0202,0.019,0.5387,0.3157
|
||||
35,0.6931,0.1823,0.5404,0.7159,0.0552,-0.034,0.0755,0.0711,0.018,0.017,0.5295,0.3091
|
||||
36,1.203,-0.2231,0.4828,0.6473,0.1177,-0.0867,0.1381,0.0631,0.0352,0.0311,0.4501,0.2641
|
||||
37,0.6419,-0.0513,-0.8989,-1.0883,0.0647,-0.1423,0.0617,0.1025,0.0597,0.0559,1.2404,0.8639
|
||||
38,0.6419,-0.2877,-0.4874,-0.6529,0.1,-0.1395,0.1032,0.1397,0.0293,0.0264,0.4526,0.2639
|
||||
39,0.4855,0.2624,0.7053,0.8987,0.0531,0.0326,0.019,0.0489,0.0295,0.0279,0.8355,0.5254
|
||||
|
@ -0,0 +1,491 @@
|
||||
"""
|
||||
Created on Tue Apr 7 11:31:21 2020
|
||||
|
||||
Author: Josef Perktold
|
||||
License: BSD-3
|
||||
|
||||
"""
|
||||
|
||||
import numpy as np
|
||||
from statsmodels.tools.testing import Holder
|
||||
|
||||
"""
|
||||
example from Kacker 2004, computed with R metafor
|
||||
|
||||
> y = c(61.0, 61.4 , 62.21, 62.3 , 62.34, 62.6 , 62.7 , 62.84, 65.9)
|
||||
> v = c(0.2025, 1.2100, 0.0900, 0.2025, 0.3844, 0.5625, 0.0676, 0.0225, 1.8225)
|
||||
> res = rma(y, v, data=dat, method="PM", control=list(tol=1e-9))
|
||||
> convert_items(res, prefix="exk1_metafor.")
|
||||
|
||||
"""
|
||||
|
||||
exk1_metafor = Holder()
|
||||
exk1_metafor.b = 62.4076199113286
|
||||
exk1_metafor.beta = 62.4076199113286
|
||||
exk1_metafor.se = 0.338030602684471
|
||||
exk1_metafor.zval = 184.621213037276
|
||||
exk1_metafor.pval = 0
|
||||
exk1_metafor.ci_lb = 61.7450921043947
|
||||
exk1_metafor.ci_ub = 63.0701477182625
|
||||
exk1_metafor.vb = 0.114264688351227
|
||||
exk1_metafor.tau2 = 0.705395309224248
|
||||
exk1_metafor.se_tau2 = 0.51419109758052
|
||||
exk1_metafor.tau2_f = 0.705395309224248
|
||||
exk1_metafor.k = 9
|
||||
exk1_metafor.k_f = 9
|
||||
exk1_metafor.k_eff = 9
|
||||
exk1_metafor.k_all = 9
|
||||
exk1_metafor.p = 1
|
||||
exk1_metafor.p_eff = 1
|
||||
exk1_metafor.parms = 2
|
||||
exk1_metafor.m = 1
|
||||
exk1_metafor.QE = 24.801897741835
|
||||
exk1_metafor.QEp = 0.00167935146372742
|
||||
exk1_metafor.QM = 34084.9923033553
|
||||
exk1_metafor.QMp = 0
|
||||
exk1_metafor.I2 = 83.7218626490482
|
||||
exk1_metafor.H2 = 6.14320900751909
|
||||
exk1_metafor.yi = np.array([
|
||||
61, 61.4, 62.21, 62.3, 62.34, 62.6, 62.7, 62.84, 65.9
|
||||
])
|
||||
exk1_metafor.vi = np.array([
|
||||
0.2025, 1.21, 0.09, 0.2025, 0.3844, 0.5625, 0.0676, 0.0225, 1.8225
|
||||
])
|
||||
exk1_metafor.X = np.array([
|
||||
1, 1, 1, 1, 1, 1, 1, 1, 1
|
||||
]).reshape(9, 1, order='F')
|
||||
|
||||
exk1_metafor.yi_f = np.array([
|
||||
61, 61.4, 62.21, 62.3, 62.34, 62.6, 62.7, 62.84, 65.9
|
||||
])
|
||||
exk1_metafor.vi_f = np.array([
|
||||
0.2025, 1.21, 0.09, 0.2025, 0.3844, 0.5625, 0.0676, 0.0225, 1.8225
|
||||
])
|
||||
exk1_metafor.X_f = np.array([
|
||||
1, 1, 1, 1, 1, 1, 1, 1, 1
|
||||
]).reshape(9, 1, order='F')
|
||||
|
||||
exk1_metafor.M = np.array([
|
||||
0.907895309224248, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1.91539530922425, 0, 0, 0, 0,
|
||||
0, 0, 0, 0, 0, 0.795395309224248, 0, 0, 0, 0, 0, 0, 0, 0, 0,
|
||||
0.907895309224248, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1.08979530922425, 0, 0, 0,
|
||||
0, 0, 0, 0, 0, 0, 1.26789530922425, 0, 0, 0, 0, 0, 0, 0, 0, 0,
|
||||
0.772995309224248, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0.727895309224248, 0, 0, 0,
|
||||
0, 0, 0, 0, 0, 0, 2.52789530922425
|
||||
]).reshape(9, 9, order='F')
|
||||
|
||||
exk1_metafor.ids = np.array([
|
||||
1, 2, 3, 4, 5, 6, 7, 8, 9
|
||||
])
|
||||
exk1_metafor.slab = np.array([
|
||||
1, 2, 3, 4, 5, 6, 7, 8, 9
|
||||
])
|
||||
exk1_metafor.measure = 'GEN'
|
||||
exk1_metafor.method = 'PM'
|
||||
exk1_metafor.test = 'z'
|
||||
exk1_metafor.s2w = 1
|
||||
exk1_metafor.btt = 1
|
||||
exk1_metafor.digits = np.array([
|
||||
4, 4, 4, 4, 4, 4, 4, 4, 4
|
||||
])
|
||||
exk1_metafor.level = 0.05
|
||||
exk1_metafor.add = 0.5
|
||||
exk1_metafor.to = 'only0'
|
||||
exk1_metafor.fit_stats = np.array([
|
||||
-12.722152033808, 21.73438033144, 29.4443040676159, 29.8387532222884,
|
||||
31.4443040676159, -11.7892200590463, 23.5784401180925, 27.5784401180925,
|
||||
27.7373232014522, 29.9784401180925
|
||||
]).reshape(5, 2, order='F')
|
||||
|
||||
exk1_metafor.model = 'rma.uni'
|
||||
|
||||
|
||||
# > res = rma(y, v, data=dat, method="DL", control=list(tol=1e-9))
|
||||
# > convert_items(res, prefix="exk1_dl.")
|
||||
|
||||
exk1_dl = Holder()
|
||||
exk1_dl.b = 62.3901386044504
|
||||
exk1_dl.beta = 62.3901386044504
|
||||
exk1_dl.se = 0.245749668040304
|
||||
exk1_dl.zval = 253.876797075543
|
||||
exk1_dl.pval = 0
|
||||
exk1_dl.ci_lb = 61.9084781058787
|
||||
exk1_dl.ci_ub = 62.8717991030221
|
||||
exk1_dl.vb = 0.0603928993419195
|
||||
exk1_dl.tau2 = 0.288049246973751
|
||||
exk1_dl.se_tau2 = 0.269366223207558
|
||||
exk1_dl.tau2_f = 0.288049246973751
|
||||
exk1_dl.k = 9
|
||||
exk1_dl.k_f = 9
|
||||
exk1_dl.k_eff = 9
|
||||
exk1_dl.k_all = 9
|
||||
exk1_dl.p = 1
|
||||
exk1_dl.p_eff = 1
|
||||
exk1_dl.parms = 2
|
||||
exk1_dl.m = 1
|
||||
exk1_dl.QE = 24.801897741835
|
||||
exk1_dl.QEp = 0.00167935146372742
|
||||
exk1_dl.QM = 64453.4280933367
|
||||
exk1_dl.QMp = 0
|
||||
exk1_dl.I2 = 67.744403741711
|
||||
exk1_dl.H2 = 3.10023721772938
|
||||
|
||||
|
||||
# > res = rma(y, v, data=dat, method="DL", test="knha", control=list(tol=1e-9))
|
||||
# > convert_items(res, prefix="exk1_dl_hksj.")
|
||||
|
||||
exk1_dl_hksj = Holder()
|
||||
exk1_dl_hksj.b = 62.3901386044504
|
||||
exk1_dl_hksj.beta = 62.3901386044504
|
||||
exk1_dl_hksj.se = 0.29477605699879
|
||||
exk1_dl_hksj.zval = 211.652666908108
|
||||
exk1_dl_hksj.pval = 2.77938607433693e-16
|
||||
exk1_dl_hksj.ci_lb = 61.710383798052
|
||||
exk1_dl_hksj.ci_ub = 63.0698934108488
|
||||
exk1_dl_hksj.vb = 0.0868929237797541
|
||||
exk1_dl_hksj.tau2 = 0.288049246973751
|
||||
exk1_dl_hksj.se_tau2 = 0.269366223207558
|
||||
exk1_dl_hksj.tau2_f = 0.288049246973751
|
||||
exk1_dl_hksj.k = 9
|
||||
exk1_dl_hksj.k_f = 9
|
||||
exk1_dl_hksj.k_eff = 9
|
||||
exk1_dl_hksj.k_all = 9
|
||||
exk1_dl_hksj.p = 1
|
||||
exk1_dl_hksj.p_eff = 1
|
||||
exk1_dl_hksj.parms = 2
|
||||
exk1_dl_hksj.m = 1
|
||||
exk1_dl_hksj.QE = 24.801897741835
|
||||
exk1_dl_hksj.QEp = 0.00167935146372742
|
||||
exk1_dl_hksj.QM = 44796.8514093144
|
||||
exk1_dl_hksj.QMp = 2.77938607433693e-16
|
||||
exk1_dl_hksj.I2 = 67.744403741711
|
||||
exk1_dl_hksj.H2 = 3.10023721772938
|
||||
|
||||
|
||||
# > res = rma(y, v, data=dat, method="FE", control=list(tol=1e-9))
|
||||
# > convert_items(res, prefix="exk1_fe.")
|
||||
|
||||
exk1_fe = Holder()
|
||||
exk1_fe.b = 62.5833970939982
|
||||
exk1_fe.beta = 62.5833970939982
|
||||
exk1_fe.se = 0.107845705498231
|
||||
exk1_fe.zval = 580.304953311515
|
||||
exk1_fe.pval = 0
|
||||
exk1_fe.ci_lb = 62.3720233953344
|
||||
exk1_fe.ci_ub = 62.7947707926621
|
||||
exk1_fe.vb = 0.0116306961944112
|
||||
exk1_fe.tau2 = 0
|
||||
exk1_fe.tau2_f = 0
|
||||
exk1_fe.k = 9
|
||||
exk1_fe.k_f = 9
|
||||
exk1_fe.k_eff = 9
|
||||
exk1_fe.k_all = 9
|
||||
exk1_fe.p = 1
|
||||
exk1_fe.p_eff = 1
|
||||
exk1_fe.parms = 1
|
||||
exk1_fe.m = 1
|
||||
exk1_fe.QE = 24.801897741835
|
||||
exk1_fe.QEp = 0.00167935146372742
|
||||
exk1_fe.QM = 336753.838837879
|
||||
exk1_fe.QMp = 0
|
||||
exk1_fe.I2 = 67.744403741711
|
||||
exk1_fe.H2 = 3.10023721772938
|
||||
|
||||
|
||||
# > res = rma(y, v, data=dat, method="FE", test="knha", control=list(tol=1e-9))
|
||||
# Warning message:
|
||||
# In rma(y, v, data = dat, method = "FE", test = "knha",
|
||||
# control = list(tol = 1e-09)) :
|
||||
# Knapp & Hartung method is not meant to be used in the context of FE models.
|
||||
# > convert_items(res, prefix="exk1_fe_hksj.")
|
||||
|
||||
exk1_fe_hksj = Holder()
|
||||
exk1_fe_hksj.b = 62.5833970939982
|
||||
exk1_fe_hksj.beta = 62.5833970939982
|
||||
exk1_fe_hksj.se = 0.189889223522271
|
||||
exk1_fe_hksj.zval = 329.57845597098
|
||||
exk1_fe_hksj.pval = 8.04326466920145e-18
|
||||
exk1_fe_hksj.ci_lb = 62.1455117593252
|
||||
exk1_fe_hksj.ci_ub = 63.0212824286713
|
||||
exk1_fe_hksj.vb = 0.0360579172098909
|
||||
exk1_fe_hksj.tau2 = 0
|
||||
exk1_fe_hksj.tau2_f = 0
|
||||
exk1_fe_hksj.k = 9
|
||||
exk1_fe_hksj.k_f = 9
|
||||
exk1_fe_hksj.k_eff = 9
|
||||
exk1_fe_hksj.k_all = 9
|
||||
exk1_fe_hksj.p = 1
|
||||
exk1_fe_hksj.p_eff = 1
|
||||
exk1_fe_hksj.parms = 1
|
||||
exk1_fe_hksj.m = 1
|
||||
exk1_fe_hksj.QE = 24.801897741835
|
||||
exk1_fe_hksj.QEp = 0.00167935146372742
|
||||
exk1_fe_hksj.QM = 108621.958640215
|
||||
exk1_fe_hksj.QMp = 8.04326466920145e-18
|
||||
exk1_fe_hksj.I2 = 67.744403741711
|
||||
exk1_fe_hksj.H2 = 3.10023721772938
|
||||
|
||||
|
||||
# effect size for proportions, metafor `escalc` function
|
||||
|
||||
# > library(metafor)
|
||||
# > dat <- dat.fine1993
|
||||
# > dat_or <- escalc(measure="OR", ai=e2i, n1i=nei, ci=c2i, n2i=nci, data=dat,
|
||||
# var.names=c("y2i","v2i"))
|
||||
# > r = dat_or[c("y2i", "v2i")]
|
||||
# > cat_items(r)
|
||||
y_or = np.array([
|
||||
0.13613217432458, 0.768370601797533, 0.374938517449009, 1.65822807660353,
|
||||
0.784954729813068, 0.361663949151077, 0.575364144903562,
|
||||
0.250542525502324, 0.650587566141149, 0.0918075492531228,
|
||||
0.273865253802803, 0.485755524477543, 0.182321556793955,
|
||||
0.980829253011726, 1.31218638896617, -0.259511195485084, 0.138402322859119
|
||||
])
|
||||
v_or = np.array([
|
||||
0.399242424242424, 0.244867149758454, 0.152761481951271, 0.463095238095238,
|
||||
0.189078465394255, 0.0689052107900588, 0.240651709401709,
|
||||
0.142027027027027, 0.280657748049052, 0.210140736456526,
|
||||
0.0373104717196078, 0.0427774287950624, 0.194901960784314,
|
||||
0.509259259259259, 1.39835164835165, 0.365873015873016, 0.108630952380952
|
||||
])
|
||||
|
||||
# > dat_rr <- escalc(measure="RR", ai=e2i, n1i=nei, ci=c2i, n2i=nci, data=dat,
|
||||
# var.names=c("y2i","v2i"))
|
||||
# > r = dat_rr[c("y2i", "v2i")]
|
||||
# > cat_items(r)
|
||||
y_rr = np.array([
|
||||
0.0595920972022457, 0.434452644981417, 0.279313822781264,
|
||||
0.934309237376833, 0.389960921572199, 0.219327702635984,
|
||||
0.328504066972036, 0.106179852041229, 0.28594445255324,
|
||||
0.0540672212702757, 0.164912297594691, 0.300079561474504,
|
||||
0.0813456394539525, 0.693147180559945, 0.177206456127184,
|
||||
-0.131336002061087, 0.0622131845015728
|
||||
])
|
||||
v_rr = np.array([
|
||||
0.0761562998405104, 0.080905695611578, 0.0856909430438842,
|
||||
0.175974025974026, 0.0551968864468864, 0.0267002515563729,
|
||||
0.074017094017094, 0.0257850995555914, 0.0590338164251208,
|
||||
0.073266499582289, 0.0137191240428942, 0.0179386112192693,
|
||||
0.0400361415752742, 0.3, 0.0213675213675214, 0.0922402159244264,
|
||||
0.021962676962677
|
||||
])
|
||||
|
||||
# > dat_rd <- escalc(measure="RD", ai=e2i, n1i=nei, ci=c2i, n2i=nci, data=dat,
|
||||
# var.names=c("y2i","v2i"))
|
||||
# > r = dat_rd[c("y2i", "v2i")]
|
||||
# > cat_items(r)
|
||||
y_rd = np.array([
|
||||
0.0334928229665072, 0.186554621848739, 0.071078431372549,
|
||||
0.386363636363636, 0.19375, 0.0860946401581211, 0.14, 0.0611028315946349,
|
||||
0.158888888888889, 0.0222222222222222, 0.0655096935584741,
|
||||
0.114173373020248, 0.045021186440678, 0.2, 0.150793650793651,
|
||||
-0.0647773279352226, 0.0342342342342342
|
||||
])
|
||||
v_rd = np.array([
|
||||
0.0240995805934916, 0.0137648162576944, 0.00539777447807907,
|
||||
0.0198934072126221, 0.0109664132254464, 0.00376813659489987,
|
||||
0.0142233846153846, 0.00842011053321928, 0.0163926076817558,
|
||||
0.0122782676856751, 0.00211164860232433, 0.00219739135615223,
|
||||
0.0119206723560942, 0.016, 0.014339804116826, 0.0226799351233969,
|
||||
0.00663520262409963
|
||||
])
|
||||
|
||||
|
||||
# > dat_as <- escalc(measure="AS", ai=e2i, n1i=nei, ci=c2i, n2i=nci, data=dat,
|
||||
# var.names=c("y2i","v2i"))
|
||||
# > r = dat_as[c("y2i", "v2i")]
|
||||
# > cat_items(r)
|
||||
y_as = np.array([
|
||||
0.0337617513001424, 0.189280827304914, 0.0815955178338458,
|
||||
0.399912703180945, 0.194987153482868, 0.0882233598093272,
|
||||
0.141897054604164, 0.0618635353537276, 0.160745373792417,
|
||||
0.0225840453649413, 0.0669694915300637, 0.117733830714136,
|
||||
0.0452997410410423, 0.221071594001477, 0.220332915310739,
|
||||
-0.0648275244591966, 0.0344168494848509
|
||||
])
|
||||
v_as = np.array([
|
||||
0.0245215311004785, 0.0144957983193277, 0.00714869281045752,
|
||||
0.0238636363636364, 0.0113839285714286, 0.00402569468666434,
|
||||
0.0146153846153846, 0.00864381520119225, 0.0169444444444444,
|
||||
0.0126984126984127, 0.0022181832395247, 0.00242071803917245,
|
||||
0.0120497881355932, 0.0222222222222222, 0.0317460317460317,
|
||||
0.0227732793522267, 0.00671171171171171
|
||||
])
|
||||
|
||||
eff_prop1 = Holder(y_rd=y_rd, v_rd=v_rd, y_rr=y_rr, v_rr=v_rr,
|
||||
y_or=y_or, v_or=v_or, y_as=y_as, v_as=v_as)
|
||||
|
||||
|
||||
# package meta metabin OR
|
||||
NA = np.nan # for R output
|
||||
results_or_dl_hk = Holder()
|
||||
# > res_mb_hk = metabin(e2i, nei, c2i, nci, data=dat2, sm="OR",
|
||||
# Q.Cochrane=FALSE, method="Inverse", method.tau="DL", hakn=TRUE,
|
||||
# backtransf=FALSE)
|
||||
# > cat_items(res_mb_hk, prefix="results_or_dl_hk.")
|
||||
results_or_dl_hk.event_e = np.array([
|
||||
18, 22, 21, 14, 42, 80, 13, 37, 23, 19, 106, 170, 34, 18, 13, 12, 42
|
||||
])
|
||||
results_or_dl_hk.n_e = np.array([
|
||||
19, 34, 72, 22, 70, 183, 26, 61, 36, 45, 246, 386, 59, 45, 14, 26, 74
|
||||
])
|
||||
results_or_dl_hk.event_c = np.array([
|
||||
12, 12, 15, 5, 13, 33, 18, 30, 12, 14, 76, 46, 17, 3, 14, 10, 40
|
||||
])
|
||||
results_or_dl_hk.n_c = np.array([
|
||||
22, 35, 68, 20, 32, 94, 50, 55, 25, 35, 208, 141, 32, 15, 18, 19, 75
|
||||
])
|
||||
results_or_dl_hk.method = 'Inverse'
|
||||
results_or_dl_hk.incr = 0.5
|
||||
results_or_dl_hk.Q_CMH = 24.9044036917599
|
||||
results_or_dl_hk.df_Q_CMH = 1
|
||||
results_or_dl_hk.pval_Q_CMH = 6.02446516918864e-07
|
||||
results_or_dl_hk.incr_e = np.array([
|
||||
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
|
||||
])
|
||||
results_or_dl_hk.incr_c = np.array([
|
||||
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0
|
||||
])
|
||||
results_or_dl_hk.studlab = np.array([
|
||||
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
|
||||
])
|
||||
results_or_dl_hk.TE = np.array([
|
||||
2.70805020110221, 1.25672336971146, 0.374938517449009, 1.65822807660353,
|
||||
0.784954729813068, 0.361663949151077, 0.575364144903562,
|
||||
0.250542525502324, 0.650587566141149, 0.0918075492531229,
|
||||
0.273865253802803, 0.485755524477543, 0.182321556793955,
|
||||
0.980829253011726, 1.31218638896617, -0.259511195485085, 0.138402322859119
|
||||
])
|
||||
results_or_dl_hk.seTE = np.array([
|
||||
1.1130538571376, 0.505568465186247, 0.390847133738078, 0.680511012471685,
|
||||
0.434831536798166, 0.26249802054503, 0.490562645746402, 0.376864733063505,
|
||||
0.529771411128472, 0.458411099840008, 0.193159187510219,
|
||||
0.206827050443269, 0.441477021807833, 0.713624032148063, 1.18251919576455,
|
||||
0.604874380241894, 0.329592099997789
|
||||
])
|
||||
results_or_dl_hk.lower = np.array([
|
||||
0.526504728259124, 0.265827386227229, -0.391107788138334,
|
||||
0.324451001076142, -0.0672994216535403, -0.152822717130236,
|
||||
-0.386120972920066, -0.488098778345447, -0.387745319709617,
|
||||
-0.806661696546688, -0.104719797000245, 0.0803819545800872,
|
||||
-0.682957505951402, -0.41784814850073, -1.00550864575963,
|
||||
-1.44504319593018, -0.507586322725471
|
||||
])
|
||||
results_or_dl_hk.upper = np.array([
|
||||
4.8895956739453, 2.2476193531957, 1.14098482303635, 2.99200515213092,
|
||||
1.63720888127968, 0.87615061543239, 1.53684926272719, 0.989183829350096,
|
||||
1.68892045199192, 0.990276795052934, 0.65245030460585, 0.891129094374998,
|
||||
1.04760061953931, 2.37950665452418, 3.62988142369196, 0.926020804960014,
|
||||
0.784390968443709
|
||||
])
|
||||
results_or_dl_hk.zval = np.array([
|
||||
2.43299116546472, 2.48576297030017, 0.959297088514073, 2.43673951811695,
|
||||
1.80519273186346, 1.37777781485798, 1.17286578970589, 0.664807564946931,
|
||||
1.22805336882057, 0.200273399324678, 1.41782152499639, 2.34860731919001,
|
||||
0.412980852428863, 1.37443416817026, 1.10965335164625, -0.429033207492279,
|
||||
0.419920024964335
|
||||
])
|
||||
results_or_dl_hk.pval = np.array([
|
||||
0.0149746662574385, 0.012927403688425, 0.337409101687073,
|
||||
0.0148203508441569, 0.0710445278963136, 0.168271897623853,
|
||||
0.240849630303111, 0.50617358344946, 0.21942693438385, 0.841266765353313,
|
||||
0.15624287815226, 0.0188437679780689, 0.67962064241999, 0.169306934699306,
|
||||
0.267148431658854, 0.667899058451397, 0.674543878468201
|
||||
])
|
||||
results_or_dl_hk.w_fixed = np.array([
|
||||
0.807174887892376, 3.91237113402062, 6.54615278162192, 2.15938303341902,
|
||||
5.28880958450166, 14.5126905285409, 4.15538290788013, 7.04091341579448,
|
||||
3.5630585898709, 4.75871559633028, 26.8021269609001, 23.3768140855494,
|
||||
5.1307847082495, 1.96363636363636, 0.715127701375246, 2.73318872017354,
|
||||
9.2054794520548
|
||||
])
|
||||
results_or_dl_hk.w_random = np.array([
|
||||
0.806082838403413, 3.8868480814364, 6.47501150011912, 2.15158503393154,
|
||||
5.24227532998639, 14.1675952027965, 4.12660238520421, 6.95867952431796,
|
||||
3.54187734484692, 4.72100880622866, 25.6483453428049, 22.4942390635843,
|
||||
5.0869781966579, 1.95718594121596, 0.714270384745876, 2.72070780232418,
|
||||
9.06541462543771
|
||||
])
|
||||
results_or_dl_hk.TE_fixed = 0.428036725396544
|
||||
results_or_dl_hk.seTE_fixed = 0.0902874968199668
|
||||
results_or_dl_hk.lower_fixed = 0.251076483375135
|
||||
results_or_dl_hk.upper_fixed = 0.604996967417954
|
||||
results_or_dl_hk.zval_fixed = 4.74081949851871
|
||||
results_or_dl_hk.pval_fixed = 2.12855503378502e-06
|
||||
results_or_dl_hk.TE_random = 0.429520368698268
|
||||
results_or_dl_hk.seTE_random = 0.0915952752397692
|
||||
results_or_dl_hk.lower_random = 0.235347059333852
|
||||
results_or_dl_hk.upper_random = 0.623693678062684
|
||||
results_or_dl_hk.zval_random = 4.68932887175579
|
||||
results_or_dl_hk.pval_random = 0.000246175101510513
|
||||
results_or_dl_hk.null_effect = 0
|
||||
results_or_dl_hk.seTE_predict = 0.100339885576592
|
||||
results_or_dl_hk.lower_predict = 0.215650965184522
|
||||
results_or_dl_hk.upper_predict = 0.643389772212014
|
||||
results_or_dl_hk.level_predict = 0.95
|
||||
results_or_dl_hk.k = 17
|
||||
results_or_dl_hk.Q = 16.181374262823
|
||||
results_or_dl_hk.df_Q = 16
|
||||
results_or_dl_hk.pval_Q = 0.440375456698129
|
||||
results_or_dl_hk.tau2 = 0.0016783981912744
|
||||
results_or_dl_hk.se_tau2 = 0.0529437644950009
|
||||
results_or_dl_hk.lower_tau2 = 0
|
||||
results_or_dl_hk.upper_tau2 = 0.45893520964914
|
||||
results_or_dl_hk.tau = 0.0409682583383086
|
||||
results_or_dl_hk.lower_tau = 0
|
||||
results_or_dl_hk.upper_tau = 0.677447569668045
|
||||
results_or_dl_hk.method_tau_ci = 'J'
|
||||
results_or_dl_hk.sign_lower_tau = ''
|
||||
results_or_dl_hk.sign_upper_tau = ''
|
||||
results_or_dl_hk.H = 1.00565197331206
|
||||
results_or_dl_hk.lower_H = 1
|
||||
results_or_dl_hk.upper_H = 1.43793739981697
|
||||
results_or_dl_hk.I2 = 0.0112088293538659
|
||||
results_or_dl_hk.lower_I2 = 0
|
||||
results_or_dl_hk.upper_I2 = 0.516362418389019
|
||||
results_or_dl_hk.Rb = 0.0117679262339789
|
||||
results_or_dl_hk.lower_Rb = 0
|
||||
results_or_dl_hk.upper_Rb = 0.725656377301252
|
||||
results_or_dl_hk.approx_TE = np.array([
|
||||
'', '', '', '', '', '', '', '', '', '', '', '', '', '', '', '', ''
|
||||
])
|
||||
results_or_dl_hk.approx_seTE = np.array([
|
||||
'', '', '', '', '', '', '', '', '', '', '', '', '', '', '', '', ''
|
||||
])
|
||||
results_or_dl_hk.sm = 'OR'
|
||||
results_or_dl_hk.level = 0.95
|
||||
results_or_dl_hk.level_comb = 0.95
|
||||
results_or_dl_hk.df_hakn = 16
|
||||
results_or_dl_hk.method_tau = 'DL'
|
||||
results_or_dl_hk.method_bias = 'score'
|
||||
results_or_dl_hk.title = ''
|
||||
results_or_dl_hk.complab = ''
|
||||
results_or_dl_hk.outclab = ''
|
||||
results_or_dl_hk.label_e = 'Experimental'
|
||||
results_or_dl_hk.label_c = 'Control'
|
||||
results_or_dl_hk.label_left = ''
|
||||
results_or_dl_hk.label_right = ''
|
||||
results_or_dl_hk.data = np.array([
|
||||
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 34, 72, 22,
|
||||
70, 183, 26, 61, 36, 45, 246, 386, 59, 45, 14, 26, 74, 22, 35, 68, 20, 32,
|
||||
94, 50, 55, 25, 35, 208, 141, 32, 15, 18, 19, 75, 16, 22, 44, 19, 62, 130,
|
||||
24, 51, 30, 43, 169, 279, 56, 42, 14, 21, NA, 20, 22, 40, 12, 27, 65, 30,
|
||||
44, 17, 35, 139, 97, 30, 10, 18, 15, NA, 18, 22, 21, 14, 42, 80, 13, 37,
|
||||
23, 19, 106, 170, 34, 18, 13, 12, 42, 12, 12, 15, 5, 13, 33, 18, 30, 12,
|
||||
14, 76, 46, 17, 3, 14, 10, 40, 4, 15, 10, 5, 26, 47, 5, 19, 13, 8, 67, 97,
|
||||
21, 9, 12, 6, NA, 8, 8, 3, 4, 6, 14, 10, 19, 4, 4, 42, 21, 9, 1, 13, 4,
|
||||
NA, 4, 15, 3, 2, 15, 30, 3, 11, 10, 6, 51, 73, 20, 9, 9, 5, 23, 3, 6, 0,
|
||||
3, 5, 11, 9, 15, 4, 0, 35, 8, 7, 1, 12, 1, 30, 18, 22, 21, 14, 42, 80, 13,
|
||||
37, 23, 19, 106, 170, 34, 18, 13, 12, 42, 19, 34, 72, 22, 70, 183, 26, 61,
|
||||
36, 45, 246, 386, 59, 45, 14, 26, 74, 12, 12, 15, 5, 13, 33, 18, 30, 12,
|
||||
14, 76, 46, 17, 3, 14, 10, 40, 22, 35, 68, 20, 32, 94, 50, 55, 25, 35,
|
||||
208, 141, 32, 15, 18, 19, 75, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13,
|
||||
14, 15, 16, 17, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5,
|
||||
0.5, 0.5, 0.5, 0.5, 0.5, 0.5
|
||||
]).reshape(17, 17, order='F')
|
||||
|
||||
results_or_dl_hk.byseparator = ' = '
|
||||
results_or_dl_hk.pscale = 1
|
||||
results_or_dl_hk.irscale = 1
|
||||
results_or_dl_hk.irunit = 'person-years'
|
||||
results_or_dl_hk.version = '4.11-0'
|
||||
@ -0,0 +1,78 @@
|
||||
"""Test values for multinomial_proportion_confint.
|
||||
|
||||
Author: Sébastien Lerique
|
||||
"""
|
||||
|
||||
|
||||
import collections
|
||||
import numpy as np
|
||||
|
||||
from statsmodels.tools.testing import Holder
|
||||
|
||||
res_multinomial = collections.defaultdict(Holder)
|
||||
|
||||
# The following examples come from the Sison & Glaz paper, and the values were
|
||||
# computed using the R MultinomialCI package.
|
||||
|
||||
# Floating-point arithmetic errors get blown up in the Edgeworth expansion
|
||||
# (starting in g1 and g2, but mostly when computing f, because of the
|
||||
# polynomials), which explains why we only obtain a precision of 4 decimals
|
||||
# when comparing to values computed in R.
|
||||
|
||||
# We test with any method name that starts with 'sison', as that is the
|
||||
# criterion.
|
||||
key1 = ('sison', 'Sison-Glaz example 1')
|
||||
res_multinomial[key1].proportions = [56, 72, 73, 59, 62, 87, 58]
|
||||
res_multinomial[key1].cis = np.array([
|
||||
[.07922912, .1643361], [.11349036, .1985973],
|
||||
[.11563169, .2007386], [.08565310, .1707601],
|
||||
[.09207709, .1771840], [.14561028, .2307172],
|
||||
[.08351178, .1686187]])
|
||||
res_multinomial[key1].precision = 4
|
||||
|
||||
key2 = ('sisonandglaz', 'Sison-Glaz example 2')
|
||||
res_multinomial[key2].proportions = [5] * 50
|
||||
res_multinomial[key2].cis = [0, .05304026] * np.ones((50, 2))
|
||||
res_multinomial[key2].precision = 4
|
||||
|
||||
key3 = ('sison-whatever', 'Sison-Glaz example 3')
|
||||
res_multinomial[key3].proportions = (
|
||||
[1] * 10 + [12] * 10 + [5] * 10 + [3] * 10 + [4] * 10)
|
||||
res_multinomial[key3].cis = np.concatenate([
|
||||
[0, .04120118] * np.ones((10, 2)),
|
||||
[.012, .08520118] * np.ones((10, 2)),
|
||||
[0, .05720118] * np.ones((10, 2)),
|
||||
[0, .04920118] * np.ones((10, 2)),
|
||||
[0, .05320118] * np.ones((10, 2))
|
||||
])
|
||||
res_multinomial[key3].precision = 4
|
||||
|
||||
# The examples from the Sison & Glaz paper only include 3 decimals.
|
||||
gkey1 = ('goodman', 'Sison-Glaz example 1')
|
||||
res_multinomial[gkey1].proportions = [56, 72, 73, 59, 62, 87, 58]
|
||||
res_multinomial[gkey1].cis = np.array([
|
||||
[.085, .166],
|
||||
[.115, .204],
|
||||
[.116, .207],
|
||||
[.091, .173],
|
||||
[.096, .181],
|
||||
[.143, .239],
|
||||
[.089, .171]])
|
||||
res_multinomial[gkey1].precision = 3
|
||||
|
||||
gkey2 = ('goodman', 'Sison-Glaz example 2')
|
||||
res_multinomial[gkey2].proportions = [5] * 50
|
||||
res_multinomial[gkey2].cis = [.005, .075] * np.ones((50, 2))
|
||||
res_multinomial[gkey2].precision = 3
|
||||
|
||||
gkey3 = ('goodman', 'Sison-Glaz example 3')
|
||||
res_multinomial[gkey3].proportions = (
|
||||
[1] * 10 + [12] * 10 + [5] * 10 + [3] * 10 + [4] * 10)
|
||||
res_multinomial[gkey3].cis = np.concatenate([
|
||||
[0, .049] * np.ones((10, 2)),
|
||||
[.019, .114] * np.ones((10, 2)),
|
||||
[.005, .075] * np.ones((10, 2)),
|
||||
[.002, .062] * np.ones((10, 2)),
|
||||
[.004, .069] * np.ones((10, 2))
|
||||
])
|
||||
res_multinomial[gkey3].precision = 3
|
||||
@ -0,0 +1,91 @@
|
||||
import numpy as np
|
||||
|
||||
from statsmodels.tools.tools import Bunch
|
||||
|
||||
cov_clu_stata = np.array([
|
||||
.00025262993207,
|
||||
-.00065043385106,
|
||||
.20961897960949,
|
||||
-.00065043385106,
|
||||
.00721940994738,
|
||||
-1.2171040967615,
|
||||
.20961897960949,
|
||||
-1.2171040967615,
|
||||
417.18890043724]).reshape(3, 3)
|
||||
|
||||
cov_pnw0_stata = np.array([
|
||||
.00004638910396,
|
||||
-.00006781406833,
|
||||
-.00501232990882,
|
||||
-.00006781406833,
|
||||
.00238784043122,
|
||||
-.49683062350622,
|
||||
-.00501232990882,
|
||||
-.49683062350622,
|
||||
133.97367476797]).reshape(3, 3)
|
||||
|
||||
cov_pnw1_stata = np.array([
|
||||
.00007381482253,
|
||||
-.00009936717692,
|
||||
-.00613513582975,
|
||||
-.00009936717692,
|
||||
.00341979122583,
|
||||
-.70768252183061,
|
||||
-.00613513582975,
|
||||
-.70768252183061,
|
||||
197.31345000598]).reshape(3, 3)
|
||||
|
||||
cov_pnw4_stata = np.array([
|
||||
.0001305958131,
|
||||
-.00022910455176,
|
||||
.00889686530849,
|
||||
-.00022910455176,
|
||||
.00468152667913,
|
||||
-.88403667445531,
|
||||
.00889686530849,
|
||||
-.88403667445531,
|
||||
261.76140136858]).reshape(3, 3)
|
||||
|
||||
cov_dk0_stata = np.array([
|
||||
.00005883478135,
|
||||
-.00011241470772,
|
||||
-.01670183921469,
|
||||
-.00011241470772,
|
||||
.00140649264687,
|
||||
-.29263014921586,
|
||||
-.01670183921469,
|
||||
-.29263014921586,
|
||||
99.248049966902]).reshape(3, 3)
|
||||
|
||||
cov_dk1_stata = np.array([
|
||||
.00009855800275,
|
||||
-.00018443722054,
|
||||
-.03257408922788,
|
||||
-.00018443722054,
|
||||
.00205106413403,
|
||||
-.3943459697384,
|
||||
-.03257408922788,
|
||||
-.3943459697384,
|
||||
140.50692606398]).reshape(3, 3)
|
||||
|
||||
cov_dk4_stata = np.array([
|
||||
.00018052657317,
|
||||
-.00035661054613,
|
||||
-.06728261073866,
|
||||
-.00035661054613,
|
||||
.0024312795189,
|
||||
-.32394785247278,
|
||||
-.06728261073866,
|
||||
-.32394785247278,
|
||||
148.60456447156]).reshape(3, 3)
|
||||
|
||||
|
||||
results = Bunch(
|
||||
cov_clu_stata=cov_clu_stata,
|
||||
cov_pnw0_stata=cov_pnw0_stata,
|
||||
cov_pnw1_stata=cov_pnw1_stata,
|
||||
cov_pnw4_stata=cov_pnw4_stata,
|
||||
cov_dk0_stata=cov_dk0_stata,
|
||||
cov_dk1_stata=cov_dk1_stata,
|
||||
cov_dk4_stata=cov_dk4_stata
|
||||
)
|
||||
@ -0,0 +1,126 @@
|
||||
"""
|
||||
|
||||
Created on Thu Feb 28 13:23:09 2013
|
||||
|
||||
Author: Josef Perktold
|
||||
"""
|
||||
|
||||
import collections
|
||||
|
||||
from statsmodels.tools.testing import Holder
|
||||
|
||||
|
||||
# numbers from R package `pwr` pwr.chisq.test
|
||||
pwr_chisquare = collections.defaultdict(Holder)
|
||||
pwr_chisquare[0].w = 1e-04
|
||||
pwr_chisquare[0].N = 5
|
||||
pwr_chisquare[0].df = 4
|
||||
pwr_chisquare[0].sig_level = 0.05
|
||||
pwr_chisquare[0].power = 0.05000000244872708
|
||||
pwr_chisquare[0].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[0].note = 'N is the number of observations'
|
||||
pwr_chisquare[1].w = 0.005
|
||||
pwr_chisquare[1].N = 5
|
||||
pwr_chisquare[1].df = 4
|
||||
pwr_chisquare[1].sig_level = 0.05
|
||||
pwr_chisquare[1].power = 0.05000612192891004
|
||||
pwr_chisquare[1].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[1].note = 'N is the number of observations'
|
||||
pwr_chisquare[2].w = 0.1
|
||||
pwr_chisquare[2].N = 5
|
||||
pwr_chisquare[2].df = 4
|
||||
pwr_chisquare[2].sig_level = 0.05
|
||||
pwr_chisquare[2].power = 0.05246644635810126
|
||||
pwr_chisquare[2].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[2].note = 'N is the number of observations'
|
||||
pwr_chisquare[3].w = 1
|
||||
pwr_chisquare[3].N = 5
|
||||
pwr_chisquare[3].df = 4
|
||||
pwr_chisquare[3].sig_level = 0.05
|
||||
pwr_chisquare[3].power = 0.396188517504065
|
||||
pwr_chisquare[3].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[3].note = 'N is the number of observations'
|
||||
pwr_chisquare[4].w = 1e-04
|
||||
pwr_chisquare[4].N = 100
|
||||
pwr_chisquare[4].df = 4
|
||||
pwr_chisquare[4].sig_level = 0.05
|
||||
pwr_chisquare[4].power = 0.05000004897454883
|
||||
pwr_chisquare[4].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[4].note = 'N is the number of observations'
|
||||
pwr_chisquare[5].w = 0.005
|
||||
pwr_chisquare[5].N = 100
|
||||
pwr_chisquare[5].df = 4
|
||||
pwr_chisquare[5].sig_level = 0.05
|
||||
pwr_chisquare[5].power = 0.05012248082672883
|
||||
pwr_chisquare[5].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[5].note = 'N is the number of observations'
|
||||
pwr_chisquare[6].w = 0.1
|
||||
pwr_chisquare[6].N = 100
|
||||
pwr_chisquare[6].df = 4
|
||||
pwr_chisquare[6].sig_level = 0.05
|
||||
pwr_chisquare[6].power = 0.1054845044462312
|
||||
pwr_chisquare[6].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[6].note = 'N is the number of observations'
|
||||
pwr_chisquare[7].w = 1
|
||||
pwr_chisquare[7].N = 100
|
||||
pwr_chisquare[7].df = 4
|
||||
pwr_chisquare[7].sig_level = 0.05
|
||||
pwr_chisquare[7].power = 0.999999999999644
|
||||
pwr_chisquare[7].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[7].note = 'N is the number of observations'
|
||||
pwr_chisquare[8].w = 1e-04
|
||||
pwr_chisquare[8].N = 1000
|
||||
pwr_chisquare[8].df = 4
|
||||
pwr_chisquare[8].sig_level = 0.05
|
||||
pwr_chisquare[8].power = 0.0500004897461283
|
||||
pwr_chisquare[8].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[8].note = 'N is the number of observations'
|
||||
pwr_chisquare[9].w = 0.005
|
||||
pwr_chisquare[9].N = 1000
|
||||
pwr_chisquare[9].df = 4
|
||||
pwr_chisquare[9].sig_level = 0.05
|
||||
pwr_chisquare[9].power = 0.0512288025485101
|
||||
pwr_chisquare[9].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[9].note = 'N is the number of observations'
|
||||
pwr_chisquare[10].w = 0.1
|
||||
pwr_chisquare[10].N = 1000
|
||||
pwr_chisquare[10].df = 4
|
||||
pwr_chisquare[10].sig_level = 0.05
|
||||
pwr_chisquare[10].power = 0.715986350467412
|
||||
pwr_chisquare[10].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[10].note = 'N is the number of observations'
|
||||
pwr_chisquare[11].w = 1
|
||||
pwr_chisquare[11].N = 1000
|
||||
pwr_chisquare[11].df = 4
|
||||
pwr_chisquare[11].sig_level = 0.05
|
||||
pwr_chisquare[11].power = 1
|
||||
pwr_chisquare[11].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[11].note = 'N is the number of observations'
|
||||
pwr_chisquare[12].w = 1e-04
|
||||
pwr_chisquare[12].N = 30000
|
||||
pwr_chisquare[12].df = 4
|
||||
pwr_chisquare[12].sig_level = 0.05
|
||||
pwr_chisquare[12].power = 0.05001469300301765
|
||||
pwr_chisquare[12].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[12].note = 'N is the number of observations'
|
||||
pwr_chisquare[13].w = 0.005
|
||||
pwr_chisquare[13].N = 30000
|
||||
pwr_chisquare[13].df = 4
|
||||
pwr_chisquare[13].sig_level = 0.05
|
||||
pwr_chisquare[13].power = 0.0904799545200348
|
||||
pwr_chisquare[13].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[13].note = 'N is the number of observations'
|
||||
pwr_chisquare[14].w = 0.1
|
||||
pwr_chisquare[14].N = 30000
|
||||
pwr_chisquare[14].df = 4
|
||||
pwr_chisquare[14].sig_level = 0.05
|
||||
pwr_chisquare[14].power = 1
|
||||
pwr_chisquare[14].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[14].note = 'N is the number of observations'
|
||||
pwr_chisquare[15].w = 1
|
||||
pwr_chisquare[15].N = 30000
|
||||
pwr_chisquare[15].df = 4
|
||||
pwr_chisquare[15].sig_level = 0.05
|
||||
pwr_chisquare[15].power = 1
|
||||
pwr_chisquare[15].method = 'Chi squared power calculation'
|
||||
pwr_chisquare[15].note = 'N is the number of observations'
|
||||
@ -0,0 +1,123 @@
|
||||
"""
|
||||
|
||||
Created on Fri Mar 01 14:48:59 2013
|
||||
|
||||
Author: Josef Perktold
|
||||
"""
|
||||
|
||||
import collections
|
||||
import numpy as np
|
||||
|
||||
from statsmodels.tools.testing import Holder
|
||||
|
||||
# numbers from R package `pwr` pwr.chisq.test
|
||||
res_binom = collections.defaultdict(Holder)
|
||||
res_binom_methods = ["agresti-coull", "asymptotic", "bayes", "cloglog",
|
||||
"exact", "logit", "probit", "profile", "lrt", "prop.test",
|
||||
"wilson"]
|
||||
|
||||
|
||||
# > bci = binom.confint(x = c(18), n = 20, tol = 1e-8)
|
||||
# > mkarray2(bci$lower, "res_binom[(18, 20)].ci_low")
|
||||
res_binom[(18, 20)].ci_low = np.array([
|
||||
0.6867561125596077, 0.768521618913513, 0.716146742695748,
|
||||
0.656030707261567, 0.6830172859809176, 0.676197991611287,
|
||||
0.7027685414174645, 0.722052946372325, 0.7220576251734515,
|
||||
0.668722403162941, 0.6989663547715128
|
||||
])
|
||||
# > mkarray2(bci$upper, "res_binom[(18, 20)].ci_upp")
|
||||
res_binom[(18, 20)].ci_upp = np.array([
|
||||
0.984343760998137, 1.031478381086487, 0.97862751197755,
|
||||
0.974010174395775, 0.9876514728297052, 0.974866415649319,
|
||||
0.978858461808406, 0.982318186566456, 0.982639913376776,
|
||||
0.982487361226571, 0.972133518786232
|
||||
])
|
||||
# >
|
||||
# > bci = binom.confint(x = c(4), n = 20, tol = 1e-8)
|
||||
# > mkarray2(bci$lower, "res_binom[(4, 20)].ci_low")
|
||||
res_binom[(4, 20)].ci_low = np.array([
|
||||
0.0749115102767071, 0.0246954918846837, 0.07152005247873425,
|
||||
0.0623757232566298, 0.05733399705003284, 0.0771334546771001,
|
||||
0.0710801045992076, 0.0668624655835687, 0.0668375191189685,
|
||||
0.0661062308910436, 0.0806576625797981
|
||||
])
|
||||
# > mkarray2(bci$upper, "res_binom[(4, 20)].ci_upp")
|
||||
res_binom[(4, 20)].ci_upp = np.array([
|
||||
0.4217635845549845, 0.3753045081153163, 0.4082257625169254,
|
||||
0.393143902056907, 0.436614002996668, 0.427846901518118,
|
||||
0.4147088121599544, 0.405367872119342, 0.405364309586823,
|
||||
0.442686245059445, 0.4160174322518935
|
||||
])
|
||||
# >
|
||||
# > bci = binom.confint(x = c(4), n = 200, tol = 1e-8)
|
||||
# > mkarray2(bci$lower, "res_binom[(4, 200)].ci_low")
|
||||
res_binom[(4, 200)].ci_low = np.array([
|
||||
0.005991954548218395, 0.000597346459104517, 0.00678759879519299,
|
||||
0.006650668467968445, 0.005475565879556443, 0.00752663882411158,
|
||||
0.00705442514086136, 0.00625387073493174, 0.00625223049303646,
|
||||
0.00642601313670221, 0.00780442641634947
|
||||
])
|
||||
# > mkarray2(bci$upper, "res_binom[(4, 200)].ci_upp")
|
||||
res_binom[(4, 200)].ci_upp = np.array([
|
||||
0.0520995587739575, 0.0394026535408955, 0.0468465669668423,
|
||||
0.04722535678688564, 0.05041360908989634, 0.05206026227201098,
|
||||
0.04916362085874019, 0.04585048214247203, 0.0458490848884339,
|
||||
0.0537574613520185, 0.05028708690582643
|
||||
])
|
||||
# > bci = binom.confint(x = c(190), n = 200, tol = 1e-8)
|
||||
# Warning message:
|
||||
# In binom.bayes(x, n, conf.level = conf.level, ...) :
|
||||
# 1 confidence interval failed to converge (marked by '*').
|
||||
# Try changing 'tol' to a different value.
|
||||
# JP: I replace 0.02094150654714356 by np.nan in Bayes
|
||||
# > mkarray2(bci$lower, "res_binom[(190, 200)].ci_low")
|
||||
res_binom[(190, 200)].ci_low = np.array([
|
||||
0.909307307911624, 0.919794926420966, np.nan,
|
||||
0.909066091776046, 0.9099724622986486, 0.9095820742314172,
|
||||
0.9118101288857796, 0.913954651984184, 0.913956305842353,
|
||||
0.9073089225133698, 0.910421851861224
|
||||
])
|
||||
# > mkarray2(bci$upper, "res_binom[(190, 200)].ci_upp")
|
||||
res_binom[(190, 200)].ci_upp = np.array([
|
||||
0.973731898348837, 0.980205073579034, 1, 0.972780587302479,
|
||||
0.975765834527891, 0.9728891271086528, 0.973671370402242,
|
||||
0.974623779100809, 0.974626983311416, 0.974392083257476,
|
||||
0.972617354399236
|
||||
])
|
||||
|
||||
# > bci = binom.confint(x = c(1), n = 30, tol = 1e-8)
|
||||
res_binom[(1, 30)].ci_low = np.array([
|
||||
-8.305484e-03, -3.090070e-02, 6.903016e-05, 2.494567e-03,
|
||||
8.435709e-04, 4.675346e-03, 3.475014e-03, 3.012987e-03,
|
||||
1.932430e-03, 1.742467e-03, 5.908590e-03])
|
||||
|
||||
res_binom[(1, 30)].ci_upp = np.array([
|
||||
0.18091798, 0.09756737, 0.12314380, 0.14513807,
|
||||
0.17216946, 0.20200244, 0.16637241, 0.13868254,
|
||||
0.13868375, 0.19053022, 0.16670391])
|
||||
|
||||
# > bci = binom.confint(x = c(29), n = 30, tol = 1e-8)
|
||||
res_binom[(29, 30)].ci_low = np.array([
|
||||
0.8190820, 0.9024326, 0.8768562, 0.7860836,
|
||||
0.8278305, 0.7979976, 0.8336276, 0.8613175,
|
||||
0.8613162, 0.8094698, 0.8332961])
|
||||
res_binom[(29, 30)].ci_upp = np.array([
|
||||
1.0083055, 1.0309007, 0.9999310, 0.9952363,
|
||||
0.9991564, 0.9953247, 0.9965250, 0.9969870,
|
||||
0.9980676, 0.9982575, 0.9940914])
|
||||
|
||||
# > bci = binom.confint(x = c(0), n = 30, tol = 1e-8)
|
||||
# Note: this ci_low clips one negative value to 0
|
||||
res_binom[(0, 30)].ci_low = np.zeros(11)
|
||||
res_binom[(0, 30)].ci_upp = np.array([
|
||||
0.13471170, 0.00000000, 0.06151672, 0.11570331,
|
||||
0.11570331, 0.11570331, 0.11570331, 0.10402893,
|
||||
0.06201781, 0.14132048, 0.11351339])
|
||||
|
||||
# > bci = binom.confint(x = c(30), n = 30, tol = 1e-8)
|
||||
res_binom[(30, 30)].ci_low = np.array([
|
||||
0.8652883, 1.0000000, 0.9384833, 0.8842967,
|
||||
0.8842967, 0.8842967, 0.8842967, 0.8959711,
|
||||
0.9379822, 0.8586795, 0.8864866])
|
||||
# Note: this ci_upp clips one value > 1
|
||||
res_binom[(30, 30)].ci_upp = np.ones(11)
|
||||
@ -0,0 +1,47 @@
|
||||
"""
|
||||
Created on Mon May 4 21:21:09 2020
|
||||
|
||||
Author: Josef Perktold
|
||||
License: BSD-3
|
||||
|
||||
"""
|
||||
|
||||
import numpy as np
|
||||
from statsmodels.tools.testing import Holder
|
||||
|
||||
NA = np.nan
|
||||
|
||||
# > pe = poisson.exact(c(60, 30), c(51477.5, 54308.7), tsmethod="minlike",
|
||||
# midp=FALSE)
|
||||
# > cat_items(pe, prefix="res.")
|
||||
res_pexact_cond = res = Holder()
|
||||
res.statistic = 60
|
||||
res.parameter = 43.7956463130352
|
||||
res.p_value = 0.000675182658686321
|
||||
res.conf_int = np.array([
|
||||
1.34983090611567, 3.27764509862914
|
||||
])
|
||||
res.estimate = 2.10999757175465
|
||||
res.null_value = 1
|
||||
res.alternative = 'two.sided'
|
||||
res.method = ('Exact two-sided Poisson test (sum of minimum likelihood'
|
||||
' method)')
|
||||
res.data_name = 'c(60, 30) time base: c(51477.5, 54308.7)'
|
||||
|
||||
|
||||
# > pe = poisson.exact(c(60, 30), c(51477.5, 54308.7), tsmethod="minlike",
|
||||
# midp=TRUE)
|
||||
# > cat_items(pe, prefix="res.")
|
||||
res_pexact_cond_midp = res = Holder()
|
||||
res.statistic = 60
|
||||
res.parameter = 43.7956463130352
|
||||
res.p_value = 0.000557262406619052
|
||||
res.conf_int = np.array([
|
||||
NA, NA
|
||||
])
|
||||
res.estimate = 2.10999757175465
|
||||
res.null_value = 1
|
||||
res.alternative = 'two.sided'
|
||||
res.method = ('Exact two-sided Poisson test (sum of minimum'
|
||||
' likelihood method), mid-p version')
|
||||
res.data_name = 'c(60, 30) time base: c(51477.5, 54308.7)'
|
||||
@ -0,0 +1,36 @@
|
||||
IV1,IV2,DV
|
||||
-0.02015,-8.12,-0.00262
|
||||
-0.09145,22.6,0.06002
|
||||
-0.23417,34.14,0.28942
|
||||
-0.11179,-24.21,-0.01991
|
||||
0.16144,-14.37,-0.11282
|
||||
0.15733,-10.98,-0.15465
|
||||
0.05293,-0.61,-0.09055
|
||||
0.05686,-3.38,-0.01311
|
||||
-0.11524,18.48,0.01793
|
||||
0.10973,-12.93,-0.02117
|
||||
0.11152,-9.32,-0.08318
|
||||
0.05917,5.86,-0.01982
|
||||
-0.00468,-6.67,0.03378
|
||||
-0.15653,25.27,0.10565
|
||||
0.115,-2.55,0.0483
|
||||
0.12352,-22.48,-0.07733
|
||||
-0.03604,3.69,0.07183
|
||||
0.05634,-6.19,-0.05512
|
||||
-0.00401,2.25,0.01318
|
||||
0.10524,-3.73,-0.00379
|
||||
0.02288,1.5,0.00922
|
||||
0.05646,-3.48,-0.02355
|
||||
0.09566,3.33,-0.06103
|
||||
0.01535,1.1,-0.0343
|
||||
0.0435,-4.41,-0.02346
|
||||
-0.00534,0,-0.05993
|
||||
0.04721,9.22,-0.00264
|
||||
0.01321,-3.86,-0.02038
|
||||
-0.00353,-3.54,-0.00693
|
||||
-0.07728,21.89,0.04091
|
||||
0.0572,-16.35,0.00791
|
||||
0.00372,3.75,0.10267
|
||||
0.02087,-2.38,-0.04426
|
||||
0.03918,-7.62,-0.05083
|
||||
0.03597,4.37,0.01428
|
||||
|
@ -0,0 +1,36 @@
|
||||
IV1,IV2,IV3,DV
|
||||
144.6,0.02846,2.28,-0.00262
|
||||
30,0.15082,2.768,0.06002
|
||||
-293.1,0.58902,3.323,0.28942
|
||||
-166,0.01642,-5.012,-0.01991
|
||||
-43.5,-0.23772,-1.471,-0.11282
|
||||
43.7,-0.42052,1.129,-0.15465
|
||||
182.4,-0.2129,1.837,-0.09055
|
||||
114.6,-0.22211,1.686,-0.01311
|
||||
207.5,0.02502,0.344,0.01793
|
||||
169.1,0.10521,-0.077,-0.02117
|
||||
172.5,-0.07982,0.637,-0.08318
|
||||
8.2,-0.08353,1.765,-0.01982
|
||||
222.5,-0.02544,2.345,0.03378
|
||||
126.2,0.28108,2.524,0.10565
|
||||
198.2,0.18466,1.465,0.0483
|
||||
188.6,-0.09714,1.014,-0.07733
|
||||
148,0.01393,1.279,0.07183
|
||||
106,-0.04318,0.482,-0.05512
|
||||
69.4,-0.14695,1.033,0.01318
|
||||
178.1,-0.07366,1.528,-0.00379
|
||||
66,0.02879,0.93,0.00922
|
||||
207.9,0.01782,-0.271,-0.02355
|
||||
250.6,-0.06627,1.253,-0.06103
|
||||
31.4,-0.114,0.906,-0.0343
|
||||
289.6,-0.08656,1.491,-0.02346
|
||||
301.4,0.01026,1.099,-0.05993
|
||||
113.6,0.12251,0.612,-0.00264
|
||||
138.8,0.05026,-0.418,-0.02038
|
||||
218.5,0,-1.507,-0.00693
|
||||
134.5,0.12344,1.373,0.04091
|
||||
59.5,0.05136,0.881,0.00791
|
||||
38,0.10883,0.212,0.10267
|
||||
212.8,-0.12725,0.067,-0.04426
|
||||
191.1,-0.09324,1.374,-0.05083
|
||||
176.4,-0.09707,1.06,0.01428
|
||||
|
@ -0,0 +1,36 @@
|
||||
IV1,IV2,DUM1,DUM2,DV
|
||||
-0.02015,7.6,0,0,0.01291
|
||||
-0.09145,44.1,0,0,-0.04267
|
||||
-0.23417,252.7,0,0,-0.25406
|
||||
-0.11179,9.4,1,0,0.34175
|
||||
0.16144,-122.1,0,0,0.10051
|
||||
0.15733,-156.2,0,0,0.13155
|
||||
0.05293,-57.3,0,0,0.09492
|
||||
0.05686,-48.1,0,0,0.03839
|
||||
-0.11524,4.9,0,0,0.0188
|
||||
0.10973,22,0,0,0.01934
|
||||
0.11152,-16.9,0,0,0.10318
|
||||
0.05917,-16.3,0,0,0.06143
|
||||
-0.00468,-4.7,0,0,0.00608
|
||||
-0.15653,59.2,0,0,-0.00281
|
||||
0.115,49,0,0,0.01905
|
||||
0.12352,-26.9,0,0,0.06962
|
||||
-0.03604,3.7,0,1,0.21069
|
||||
0.05634,-11.3,0,0,0.06319
|
||||
-0.00401,-35,0,0,0.03645
|
||||
0.10524,-15.7,0,0,0.0444
|
||||
0.02288,6,0,0,0.02033
|
||||
0.05646,3.8,0,0,0.06044
|
||||
0.09566,-13.8,0,0,0.06762
|
||||
0.01535,-21.7,0,0,0.03301
|
||||
0.0435,-14.9,0,0,0.01857
|
||||
-0.00534,1.7,0,0,0.06799
|
||||
0.04721,21.7,0,0,0.01813
|
||||
0.01321,9.7,0,0,0.02022
|
||||
-0.00353,0,0,0,0.01317
|
||||
-0.07728,26,0,0,-0.00628
|
||||
0.0572,11.8,0,0,0.02035
|
||||
0.00372,27.1,0,0,-0.04564
|
||||
0.02087,-31.4,0,0,0.04537
|
||||
0.03918,-20.6,0,0,0.07685
|
||||
0.03597,-19.5,0,0,0.03299
|
||||
|
@ -0,0 +1,36 @@
|
||||
IV1,IV2,IV3,DUM1,DUM2,DV
|
||||
144.6,-0.02036,0.03699,0,0,0.01291
|
||||
30,-0.09591,-0.25186,0,0,-0.04267
|
||||
-293.1,-0.2668,0.93698,0,0,-0.25406
|
||||
-166,-0.11855,0.73074,1,0,0.34175
|
||||
-43.5,0.14966,-0.29941,0,0,0.10051
|
||||
43.7,0.14612,-0.25366,0,0,0.13155
|
||||
182.4,0.05158,-0.2597,0,0,0.09492
|
||||
114.6,0.0553,-0.01949,0,0,0.03839
|
||||
207.5,-0.12244,-0.11013,0,0,0.0188
|
||||
169.1,0.10412,0.67668,0,0,0.01934
|
||||
172.5,0.10573,-0.28238,0,0,0.10318
|
||||
8.2,0.05749,-0.28363,0,0,0.06143
|
||||
222.5,-0.00469,0.24894,0,0,0.00608
|
||||
126.2,-0.17023,-0.22687,0,0,-0.00281
|
||||
198.2,0.10886,1.11175,0,0,0.01905
|
||||
188.6,0.11647,-0.05312,0,0,0.06962
|
||||
148,-0.03671,-0.49461,0,1,0.21069
|
||||
106,0.05481,0.16064,0,0,0.06319
|
||||
69.4,-0.00402,-0.23218,0,0,0.03645
|
||||
178.1,0.10007,0.10992,0,0,0.0444
|
||||
66,0.02262,-0.16417,0,0,0.02033
|
||||
207.9,0.05493,0.07899,0,0,0.06044
|
||||
250.6,0.09136,-0.16984,0,0,0.06762
|
||||
31.4,0.01524,0.19577,0,0,0.03301
|
||||
289.6,0.04258,0.05408,0,0,0.01857
|
||||
301.4,-0.00535,-0.20569,0,0,0.06799
|
||||
113.6,0.04613,0,0,0,0.01813
|
||||
138.8,0.01312,0.5414,0,0,0.02022
|
||||
218.5,-0.00354,-0.14705,0,0,0.01317
|
||||
134.5,-0.08043,-0.15811,0,0,-0.00628
|
||||
59.5,0.05562,1.16127,0,0,0.02035
|
||||
38,0.00371,-0.40133,0,0,-0.04564
|
||||
212.8,0.02066,0.15375,0,0,0.04537
|
||||
191.1,0.03843,-0.08458,0,0,0.07685
|
||||
176.4,0.03534,-0.29581,0,0,0.03299
|
||||
|
Reference in New Issue
Block a user